View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_44 (Length: 263)
Name: NF14395_low_44
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 2222652 - 2222846
Alignment:
| Q |
19 |
ttacatgcttcgtgtcatcccaatctcatgtctcatatacgtatacaaaaagcaac---------gatagtttcctccttcaagaagataaatcaaacat |
109 |
Q |
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| T |
2222652 |
ttacatgcttcgtgtcatcccaatctcatgtctcatatacgtatacaaaaagcaaccatgccatcgatagtttcctccttcaagaagataaatcaaacat |
2222751 |
T |
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| Q |
110 |
ttcataaatttgcttagatatgtgttttagtacaccaatatatatacac----tatgtcacatgtaacatcggattctggtagtaaaaacaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222752 |
ttcataaatttgcttagatatgtgttttagtacaccaatatatatacactatatatgtcacatgtaacatcggattctggtagtaaaaacaataa |
2222846 |
T |
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