View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_51 (Length: 239)
Name: NF14395_low_51
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 47811895 - 47811693
Alignment:
| Q |
19 |
atctaaatcgaccgactacactcagcaacaaaaatatgcataccatctatggagattaatttcaattaattaaataccttagtggtttaaacgaaaatca |
118 |
Q |
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| T |
47811895 |
atctaaattgaccgactacactcagcaacaaaaatatgcataccatctatggagattaatttcaattaattaaataccttagtggtttaaacgaaaatca |
47811796 |
T |
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| Q |
119 |
atggaaaatcggctattaggagctccgatgctacaaatgcaatcatcggaaaatggaaatcaatggagagacttcaagtgaaatatctggcatcgtggaa |
218 |
Q |
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| T |
47811795 |
atggaaaatcggccattaggagctccgatgctacaaatgcaatcatcggaaaatggaaatcaatggagagacttcaagtgaaatatctggcatcgtggaa |
47811696 |
T |
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| Q |
219 |
ctt |
221 |
Q |
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||| |
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| T |
47811695 |
ctt |
47811693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 51324035 - 51323999
Alignment:
| Q |
175 |
aaatcaatggagagacttcaagtgaaatatctggcat |
211 |
Q |
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| T |
51324035 |
aaatcaatggagtgacttcaagtggaatatctggcat |
51323999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 4748401 - 4748437
Alignment:
| Q |
175 |
aaatcaatggagagacttcaagtgaaatatctggcat |
211 |
Q |
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|||||||||||| ||||||||||| |||||||||||| |
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| T |
4748401 |
aaatcaatggagtgacttcaagtggaatatctggcat |
4748437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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