View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14395_low_52 (Length: 235)
Name: NF14395_low_52
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 26945995 - 26945797
Alignment:
| Q |
19 |
aatattcatgaaaatacttagttggtcacaaatgtttaaacattttatttggacacactaagtaaagttataaagnnnnnnngagcatactaatgtgtat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
26945995 |
aatattcatgaaaatacttagttggtcacaaatgtttaaacattttatttggacacactaagtaaagttataaagaaaaaaagagtatactaatgtgtat |
26945896 |
T |
|
| Q |
119 |
ttttaaaatatttaaaaaatatatatttatatgtgtttgcgactaaatatttgtgataatgctagacttcctcaatattgatatacctgatagtatatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26945895 |
ttttaaaatatttaaaaaatatatatttatatgtgtttgcgactaaatatttgtgataatgctagacttcctcaatattgatatacctgatagtatatg |
26945797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University