View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_57 (Length: 202)
Name: NF14395_low_57
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 47811863 - 47811693
Alignment:
| Q |
14 |
aatatgcataccatctatggagattaatttcaattaattaaataccttagtggtttaaacgaaaatcaatggaaaatcggctattaggagctccgatgct |
113 |
Q |
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| T |
47811863 |
aatatgcataccatctatggagattaatttcaattaattaaataccttagtggtttaaacgaaaatcaatggaaaatcggccattaggagctccgatgct |
47811764 |
T |
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| Q |
114 |
acaaatgcaatcatcggaaaatggaaatcaatggagagacttcaagtgaaatatctggcatcgtggaactt |
184 |
Q |
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| T |
47811763 |
acaaatgcaatcatcggaaaatggaaatcaatggagagacttcaagtgaaatatctggcatcgtggaactt |
47811693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 51324035 - 51323999
Alignment:
| Q |
138 |
aaatcaatggagagacttcaagtgaaatatctggcat |
174 |
Q |
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| T |
51324035 |
aaatcaatggagtgacttcaagtggaatatctggcat |
51323999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 4748401 - 4748437
Alignment:
| Q |
138 |
aaatcaatggagagacttcaagtgaaatatctggcat |
174 |
Q |
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| T |
4748401 |
aaatcaatggagtgacttcaagtggaatatctggcat |
4748437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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