View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14395_low_7 (Length: 600)
Name: NF14395_low_7
Description: NF14395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14395_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 589
Target Start/End: Original strand, 44488838 - 44489408
Alignment:
| Q |
19 |
cagcaccaacattggtcactcttcctcaacctgatcaaatgaatcaatcttccacactaataagtcatacccttcaacaagtatatcaattttatacact |
118 |
Q |
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| T |
44488838 |
cagcaccaacattggtcactcttcctcaacctgatcaaatgaatcaatcttctacactaataagtcatacccttcaacaagtatatcaattttat-cact |
44488936 |
T |
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| Q |
119 |
tagcttctcgttannnnnnnnnnnnnnnng-aagcatttatccaaactagggaataccctttaattaaaaatcattcataataacatatttattcagtat |
217 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44488937 |
tagcttctcgttattttttttttatttttttaagcatttatccgaactagggaataccctttaattaaaaatcattcataataacatatttattcagtat |
44489036 |
T |
|
| Q |
218 |
atatcttttcannnnnnnnnncaacaccnnnnnnnngcttttcattattgtcccttttgccctaaaaagtttagtcactagtttacaaatcaatgcgtat |
317 |
Q |
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| T |
44489037 |
atatcttttcattttttttttcaacaccaaaaaaaagcttttcattattgtcccttttgccctaaaaagtttagtcactagtttacaaatcaatgtgtat |
44489136 |
T |
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| Q |
318 |
cttaaataatttcatattttattgtatcttgaataagagacaatatgcatttttcagattaatgagactagactgattagtagtatgtgcaaatacctaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489137 |
cttaaataatttcatattttattgtatcttgaataagagacaatatgcatttttcagattaatgagactagactgattagtagtatgtgcaaatacctaa |
44489236 |
T |
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| Q |
418 |
tcaccataaagacaagctgcaattctccagcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttcttttatgtactca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489237 |
tcaccataaagacaagctgcaattctccagcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttcttttatgtactca |
44489336 |
T |
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| Q |
518 |
ttcacaattttaaaatacttgaatgattttagtaaaaatactttacttaactagttatgtattatattcttc |
589 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44489337 |
ttcacaattttaaaatacttgaatgattttagtaaaaatactttacttaactagttatgtattattttcttc |
44489408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 429 - 508
Target Start/End: Original strand, 44495345 - 44495424
Alignment:
| Q |
429 |
acaagctgcaattctccagcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttctttt |
508 |
Q |
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||||||||| ||||||| ||||||||||||| ||||||| ||| ||||||||||| || ||||||| |||||||||| |
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| T |
44495345 |
acaagctgccgttctccacaatatacaacagatagaatcagtatttcatttggagatgctcatggctctgaggttctttt |
44495424 |
T |
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