View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14396_high_4 (Length: 293)
Name: NF14396_high_4
Description: NF14396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14396_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 46885159 - 46884879
Alignment:
| Q |
1 |
cacccataccacttccatgaccagtattgtcattaccatgatcatgagagattccatggtcatcactagtattagtattactatggagctctaatgtctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46885159 |
cacccataccacttccatgaccagtattgtcattaccatgatcatgagagattccatggtcatcactagtattagtattactatggagctctaatgtctc |
46885060 |
T |
|
| Q |
101 |
agagtctgaattttcattttcattttcatttccaccattgtcagtactgggataattatggatatcagtatcatcctcattattacttctattactcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46885059 |
agagtctgaattttcattttcatt---atttccaccattgtcagtactgggataattatggatatcagtatcatcctcattattacttctattactcttc |
46884963 |
T |
|
| Q |
201 |
ttttttccaaagagcccacgtaaaaaaccaaaaccacctctccggccacttcttctgttacctggtaagttgtacctcgaagat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46884962 |
ttttttccaaagagcccacgtaaaaaaccaaaaccacctctccggcgacttcttctgttacctggtaagttggacctcgaagat |
46884879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University