View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14396_high_8 (Length: 248)

Name: NF14396_high_8
Description: NF14396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14396_high_8
NF14396_high_8
[»] chr4 (10 HSPs)
chr4 (10-248)||(26057782-26058020)
chr4 (31-159)||(6161913-6162039)
chr4 (97-192)||(53529326-53529421)
chr4 (31-159)||(20192961-20193087)
chr4 (29-192)||(7740122-7740283)
chr4 (163-239)||(26081600-26081679)
chr4 (31-79)||(13999737-13999785)
chr4 (31-80)||(19570246-19570295)
chr4 (207-248)||(20193139-20193180)
chr4 (207-248)||(53981666-53981707)
[»] chr8 (5 HSPs)
chr8 (81-248)||(32722402-32722569)
chr8 (29-192)||(34191752-34191913)
chr8 (31-73)||(8509530-8509572)
chr8 (114-192)||(16846148-16846226)
chr8 (207-248)||(41048430-41048471)
[»] chr6 (2 HSPs)
chr6 (36-190)||(17270563-17270715)
chr6 (31-170)||(6932692-6932829)
[»] chr1 (9 HSPs)
chr1 (31-159)||(33493305-33493431)
chr1 (31-190)||(16168396-16168553)
chr1 (31-159)||(15716288-15716414)
chr1 (90-190)||(11442101-11442201)
chr1 (31-134)||(27163565-27163666)
chr1 (207-248)||(15716195-15716236)
chr1 (207-248)||(16168331-16168372)
chr1 (207-248)||(33493483-33493524)
chr1 (114-192)||(22576621-22576696)
[»] chr5 (7 HSPs)
chr5 (31-192)||(28367350-28367506)
chr5 (96-190)||(17945381-17945475)
chr5 (207-248)||(28367528-28367569)
chr5 (31-159)||(30957966-30958092)
chr5 (207-248)||(30958144-30958185)
chr5 (144-192)||(9362391-9362439)
chr5 (172-248)||(18080447-18080522)
[»] chr3 (16 HSPs)
chr3 (31-192)||(20454251-20454410)
chr3 (31-159)||(13981025-13981151)
chr3 (31-248)||(40801007-40801226)
chr3 (31-159)||(2169020-2169146)
chr3 (31-159)||(13990496-13990622)
chr3 (31-159)||(23344040-23344166)
chr3 (111-188)||(29224963-29225040)
chr3 (31-192)||(9724993-9725149)
chr3 (135-238)||(26830756-26830858)
chr3 (142-193)||(52932883-52932934)
chr3 (207-248)||(2169198-2169239)
chr3 (31-159)||(3110877-3111003)
chr3 (207-248)||(9725171-9725212)
chr3 (207-248)||(13990403-13990444)
chr3 (207-248)||(23343947-23343988)
chr3 (117-190)||(44122470-44122543)
[»] chr7 (15 HSPs)
chr7 (31-159)||(16648087-16648213)
chr7 (31-159)||(17622448-17622574)
chr7 (31-159)||(32148141-32148267)
chr7 (31-159)||(42208572-42208698)
chr7 (31-158)||(25498720-25498845)
chr7 (36-192)||(571058-571209)
chr7 (143-192)||(26457324-26457373)
chr7 (135-193)||(5997947-5998005)
chr7 (207-248)||(571231-571272)
chr7 (207-248)||(16647994-16648035)
chr7 (207-248)||(17622355-17622396)
chr7 (207-248)||(25498626-25498667)
chr7 (207-248)||(32148048-32148089)
chr7 (207-248)||(42162802-42162843)
chr7 (207-248)||(42208479-42208520)
[»] chr2 (17 HSPs)
chr2 (31-159)||(1525397-1525523)
chr2 (31-159)||(7910332-7910458)
chr2 (31-159)||(22430012-22430138)
chr2 (31-159)||(22435606-22435732)
chr2 (29-190)||(17319882-17320040)
chr2 (31-156)||(43776659-43776782)
chr2 (31-159)||(635946-636072)
chr2 (31-159)||(14898447-14898573)
chr2 (31-78)||(16443699-16443746)
chr2 (207-248)||(635853-635894)
chr2 (207-248)||(1525305-1525346)
chr2 (207-248)||(7910510-7910551)
chr2 (207-248)||(14898354-14898395)
chr2 (207-248)||(22429919-22429960)
chr2 (207-248)||(22435513-22435554)
chr2 (24-73)||(34574025-34574074)
chr2 (207-248)||(43776563-43776604)
[»] scaffold0461 (1 HSPs)
scaffold0461 (38-159)||(12966-13085)
[»] scaffold0004 (2 HSPs)
scaffold0004 (31-159)||(346040-346166)
scaffold0004 (207-248)||(346218-346259)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 26057782 - 26058020
Alignment:
Q  10 aagaactaccaacaacccacgtaaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  26057782 aagaaataccaacaacccacgtaaaaacaattatatatgagacgaagaaggtcaaataatctttcgtactatagttattcaaaagatttacttgacagtg 26057881  T
Q  110 tctttgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttgccagggtttccataaga 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26057882 tctttgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatcttcatattgagttgttgccagggtttccataaga 26057981  T
Q  210 aaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26057982 aaaccacaagtttcttgtatgtgtaaaattttaatcctt 26058020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 6162039 - 6161913
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  6162039 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 6161942  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||  |||||||||||||||||||||||    
T  6161941 tatctctatactcttctccaaattagcag 6161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 192
Target Start/End: Complemental strand, 53529421 - 53529326
Alignment:
Q  97 ttacttgacagtgtctttgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    ||||||| | ||| ||||||||||| | ||| ||||||   ||||||||||||||||||||||   ||||||||||||||| ||||||||| ||||    
T  53529421 ttacttggcggtgactttgtagaaatatatgatttatctccatactcttctccaaattagcagctcttgagatattatcttcatattgagtagttg 53529326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 20192961 - 20193087
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  20192961 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 20193058  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  20193059 tatctccatactcttctccaaattagcag 20193087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 7740122 - 7740283
Alignment:
Q  29 cgtaaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatgg 128  Q
    |||||| | ||||||| ||||||||||||| ||||||||| |||| ||||||   ||  ||||||  |||||||||| ||| |||| ||||||||  ||     
T  7740122 cgtaaagataattatacatgagacgaagaaagtcaaataaccttttatactag--ttgctcaaaagttttacttgacggtgactttatagaaagatctga 7740219  T
Q  129 tttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
     |||||   || |||||||| |||||||||    |||| |||||||||| ||||||||||||||    
T  7740220 cttatctccatgctcttctctaaattagcacaacttgatatattatcttgatattgagttgttg 7740283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 26081600 - 26081679
Alignment:
Q  163 ttgagatattatctttatattgagttgttgccagggtttccataagaaaaccacaag---tttcttgtatgtgtaaaatt 239  Q
    ||||||||||||||| |||||||||| || | |||||| | |||||||||| |||||   |||||||||||| |||||||    
T  26081600 ttgagatattatcttcatattgagttatttctagggttgctataagaaaacaacaagtaatttcttgtatgtttaaaatt 26081679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 13999785 - 13999737
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatact 79  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| |||||    
T  13999785 taaagacaatcatatatgagacgaagaaagtcaaataatcttttatact 13999737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 19570295 - 19570246
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatacta 80  Q
    |||| ||||||||||||| ||||||||| |||||||||||| | ||||||    
T  19570295 taaagacaattatatatgtgacgaagaaggtcaaataatctcttatacta 19570246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 20193139 - 20193180
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  20193139 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 20193180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 53981707 - 53981666
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  53981707 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 53981666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 248
Target Start/End: Complemental strand, 32722569 - 32722402
Alignment:
Q  81 taattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttat 180  Q
    |||||| |||||||||||| |||||  || |||||||||||||   ||| |||| | | |||||||||||||||| | |||||||||||||||| || ||    
T  32722569 taattactcaaaaaatttatttgacgatgactttgtagaaagatccggtctatcttcacactcttctccaaattaacggtgtttgagatattatattcat 32722470  T
Q  181 attgagttgttgccagggtttccataagaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    |||||| |||||| || |   || |||||||||||||||||||||||||||||||| || ||||||||    
T  32722469 attgagatgttgcaagagcccccttaagaaaaccacaagtttcttgtatgtgtaaatttgtaatcctt 32722402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 34191752 - 34191913
Alignment:
Q  29 cgtaaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatgg 128  Q
    |||||| |||||||||||||||| |||||| |||||| |||| || || |||   |||  |||||  |||||||||| ||| || | ||||||||  ||     
T  34191752 cgtaaagacaattatatatgagaagaagaaagtcaaaaaatcatttatgctag--ttacccaaaatctttacttgacggtgactatatagaaagatttga 34191849  T
Q  129 tttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    | ||||   |  ||||||||||||||| || || || |||||||||||| ||||||||||||||    
T  34191850 tatatctccacgctcttctccaaattaacattgattaagatattatcttcatattgagttgttg 34191913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 8509572 - 8509530
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatcttt 73  Q
    ||||||||||||||| | |||||||||| ||||||||||||||    
T  8509572 taaaaacaattatatgttagacgaagaaggtcaaataatcttt 8509530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 16846148 - 16846226
Alignment:
Q  114 tgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    |||||||| | ||| |||||| | |||||||||| |||||||||||   ||||||||| ||||| ||||| ||||||||    
T  16846148 tgtagaaaaatatgatttatcttcatactcttcttcaaattagcagctcttgagatatcatcttcatatttagttgttg 16846226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 41048471 - 41048430
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  41048471 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 41048430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 190
Target Start/End: Original strand, 17270563 - 17270715
Alignment:
Q  36 acaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtttatca 135  Q
    |||||||||||||||| || ||| |||||||||||||| ||  |    |||| |||||  |||||||||| ||| || |||||||||| ||||| ||||     
T  17270563 acaattatatatgagaggatgaaagtcaaataatcttttatgttgg--ttatccaaaacctttacttgacggtgactatgtagaaagatatggtatatct 17270660  T
Q  136 ttatactcttctccaaattagcagtgtttgagatattatctttatattgagttgt 190  Q
      || |||||||||||||||||| |  |||||||||| |||| ||||||||||||    
T  17270661 ccatgctcttctccaaattagcaattcttgagatattgtcttcatattgagttgt 17270715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 6932829 - 6932692
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||| |||||||||||| |||||  | |||||||| || ||||||   ||| ||||||  |||||||| | ||| || |||||||||| ||| |     
T  6932829 taaagacaactatatatgagaccaagaagtttaaataatcatttatactag--ttactcaaaatctttacttggccgtgactctgtagaaagatatgatc 6932732  T
Q  131 tatcattatactcttctccaaattagcagtgtttgagata 170  Q
    ||||    |||||||||||||||||||||  |||||||||    
T  6932731 tatctccgtactcttctccaaattagcagcttttgagata 6932692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 33493305 - 33493431
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| ||||||||||||| ||| |     
T  33493305 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactttgtagaaagatatgata 33493402  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  33493403 tatctccatactcttctccaaattagcag 33493431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 16168553 - 16168396
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||| |||||||||||||| ||| |||||||||||||| || |||   |||| |||||  ||||||||||  || || |||||||||| |||||     
T  16168553 taaagacaaatatatatgagacgaggaaagtcaaataatcttttatgctag--ttatccaaaatctttacttgacgatgactatgtagaaagatatggta 16168456  T
Q  131 tatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgt 190  Q
    ||||   || |||||||||||||| ||| |  |||||||||| ||||  |||||||||||    
T  16168455 tatctccatgctcttctccaaatttgcacttcttgagatattgtcttcgtattgagttgt 16168396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 15716414 - 15716288
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  15716414 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 15716317  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  15716316 tatctccatactcttctccaaattagcag 15716288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 11442101 - 11442201
Alignment:
Q  90 aaaaaatttacttgacagtgtctttgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttg 189  Q
    |||| ||||||||| | ||| || | |||||||| ||| | |||| | ||||| ||||||||||||||||| ||||| ||||| |||| |||| ||||||    
T  11442101 aaaatatttacttggcggtgactctatagaaagatatgatatatcttcatactattctccaaattagcagtttttgatatattgtcttcatatggagttg 11442200  T
Q  190 t 190  Q
    |    
T  11442201 t 11442201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 27163565 - 27163666
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| ||||||||||||||  ||||||| |||||||||| ||| |||   || ||| ||||||  |||||||||| ||| |||||||||||||  |||||    
T  27163565 taaagacaattatatatgacgcgaagaaggtcaaataatattttata--ttagttactcaaaagttttacttgacggtgactttgtagaaagatctggtt 27163662  T
Q  131 tatc 134  Q
    ||||    
T  27163663 tatc 27163666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 15716236 - 15716195
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  15716236 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 15716195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 16168372 - 16168331
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  16168372 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 16168331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 33493483 - 33493524
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  33493483 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 33493524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 22576621 - 22576696
Alignment:
Q  114 tgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    |||||||||| ||| | |||| | ||||||||||||||||||||||   ||||||   |||||||||| ||||||||||    
T  22576621 tgtagaaagatatgatatatcttcatactcttctccaaattagcagctcttgaga---tatctttataatgagttgttg 22576696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 28367350 - 28367506
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  28367350 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 28367447  T
Q  131 tatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    ||||   |||||||||||||||||||||||  ||| ||   |||||| ||||||||||||||    
T  28367448 tatctccatactcttctccaaattagcagttcttgtga---tatcttcatattgagttgttg 28367506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 17945475 - 17945381
Alignment:
Q  96 tttacttgacagtgtctttgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgt 190  Q
    |||||||||| ||| || |||||||||| ||||| ||||   || ||||||||||| ||||||||  |||||||||| |||| ||||||||||||    
T  17945475 tttacttgacggtgactatgtagaaagatatggtatatctccatgctcttctccaatttagcagttcttgagatattgtcttcatattgagttgt 17945381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 28367528 - 28367569
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  28367528 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 28367569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 30957966 - 30958092
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||  ||| || |||||||||| ||| |     
T  30957966 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgatggtgactctgtagaaagatatgata 30958063  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   | ||||||||||||||||||||    
T  30958064 tatctccaaactcttctccaaattagcag 30958092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 30958144 - 30958185
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  30958144 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 30958185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 9362439 - 9362391
Alignment:
Q  144 ttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    |||||||||||| |||| ||| |||||||||||| ||||||| ||||||    
T  9362439 ttctccaaattaacagtttttaagatattatcttcatattgatttgttg 9362391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 18080447 - 18080522
Alignment:
Q  172 tatctttatattgagttgttgccagggtttccataagaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    |||||| ||||||||||||||  || || ||| || ||||| |||||||||||||||||||| ||||  ||||||||    
T  18080447 tatcttcatattgagttgttgaaagagtctcctta-gaaaatcacaagtttcttgtatgtgtgaaatcataatcctt 18080522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 20454410 - 20454251
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||| ||||||||| |||||| |||||||||| ||| | ||||   ||| ||||||  | |||||| | ||| ||||| ||| |||  || ||    
T  20454410 taaagacaattgtatatgagatgaagaaagtcaaataatattttacactag--ttactcaaaagctatacttggcggtgactttgaagagagatctgatt 20454313  T
Q  131 tatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    |||| | | || ||||||||||||||||| | |||| |||||||||| ||||||||||||||    
T  20454312 tatcttcacacccttctccaaattagcagcgcttgaaatattatcttcatattgagttgttg 20454251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 13981025 - 13981151
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  13981025 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 13981122  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  13981123 tatccccatactcttctccaaattagcag 13981151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 40801007 - 40801226
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||| ||  | ||||||||||| || |  || ||| ||||||  |||||||||| ||| || |||||||||| ||  |     
T  40801007 taaagacaattatatatgagacgaaaaagtttaaataatcttttatgc--tagttactcaaaatctttacttgacggtgactctgtagaaagatataata 40801104  T
Q  131 tatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttgccagggtttcc-------ataagaaaaccacaagtttc 223  Q
    ||||   |||||||||||||||||||||||  ||| ||   |||||| ||||||||||||||  || |  |||       || |||||||||||||||||    
T  40801105 tatctccatactcttctccaaattagcagttcttgtga---tatcttcatattgagttgttgaaagagcctccttttaaaattagaaaaccacaagtttc 40801201  T
Q  224 ttgtatgtgtaaaattttaatcctt 248  Q
    |||||||||| ||||  ||||||||    
T  40801202 ttgtatgtgtgaaatcataatcctt 40801226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 2169020 - 2169146
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||| ||| || |||||||| | ||| |     
T  2169020 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacggtgactctgtagaaatatatgata 2169117  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  2169118 tatctccatactcttctccaaattagcag 2169146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 13990622 - 13990496
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||| ||| || |||||||| | ||| |     
T  13990622 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacggtgactctgtagaaatatatgata 13990525  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  13990524 tatctccatactcttctccaaattagcag 13990496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 23344166 - 23344040
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||| ||| || |||||||| | ||| |     
T  23344166 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacggtgactctgtagaaatatatgata 23344069  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  23344068 tatctccatactcttctccaaattagcag 23344040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 29225040 - 29224963
Alignment:
Q  111 ctttgtagaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagtt 188  Q
    |||||||||||||   |||||||| | ||||||||||| || |||| |||  ||||||||||||||| ||||||||||    
T  29225040 ctttgtagaaagatcaggtttatcttcatactcttctctaatttagaagtccttgagatattatcttcatattgagtt 29224963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 9724993 - 9725149
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||| ||||||  | ||| ||||||| ||  ||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  9724993 taaagacaattatatatgagatgaagaagtttaaacaatcttttatgttag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 9725090  T
Q  131 tatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    ||||   |||||||||||||||||||||||  ||| ||   |||||| ||||||||||||||    
T  9725091 tatctccatactcttctccaaattagcagttcttgtga---tatcttcatattgagttgttg 9725149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 26830858 - 26830756
Alignment:
Q  135 attatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttgccagggtttccataagaaaaccacaagtttcttgtatgtgta 234  Q
    |||||||||| ||| ||||||  | |||||||||||| ||||| | ||||| || |||  || || ||| ||| ||||| ||||||||||||||||||||    
T  26830858 attatactctactcaaaattactattgtttgagatatcatcttcacattgatttcttgtaagagtctccttaaaaaaac-acaagtttcttgtatgtgta 26830760  T
Q  235 aaat 238  Q
    ||||    
T  26830759 aaat 26830756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 52932883 - 52932934
Alignment:
Q  142 tcttctccaaattagcagtgtttgagatattatctttatattgagttgttgc 193  Q
    ||||||||||||||||| || ||||||| |||||||||| ||||| ||||||    
T  52932883 tcttctccaaattagcaatgattgagatgttatctttattttgagctgttgc 52932934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 2169198 - 2169239
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  2169198 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 2169239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 3110877 - 3111003
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||  ||| || |||||||||| ||| |     
T  3110877 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgatggtgactctgtagaaagatatgata 3110974  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   | ||||||||||||||||||||    
T  3110975 tatctccaaactcttctccaaattagcag 3111003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 9725171 - 9725212
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  9725171 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 9725212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 13990444 - 13990403
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  13990444 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 13990403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 23343988 - 23343947
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  23343988 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 23343947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 44122470 - 44122543
Alignment:
Q  117 agaaagaaatggtttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgt 190  Q
    ||||||| ||| | |||| | ||||| |||||||||||||||||  |||||||||| |||| |||| |||||||    
T  44122470 agaaagatatgatatatcttcatacttttctccaaattagcagttcttgagatattgtcttcatatagagttgt 44122543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 16648213 - 16648087
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||||||| || |||||||| | ||| |     
T  16648213 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacagtgactctgtagaaatatatgata 16648116  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  16648115 tatctccatactcttctccaaattagcag 16648087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 17622574 - 17622448
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||||||| || |||||||| | ||| |     
T  17622574 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacagtgactctgtagaaatatatgata 17622477  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  17622476 tatctccatactcttctccaaattagcag 17622448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 32148267 - 32148141
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  32148267 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 32148170  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  32148169 tatctccatactcttctccaaattagcag 32148141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 42208698 - 42208572
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  42208698 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 42208601  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  42208600 tatctccatactcttctccaaattagcag 42208572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 25498845 - 25498720
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||| |||||||||  ||| || |||||||||| ||| |     
T  25498845 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaaactttacttgatggtgactctgtagaaagatatgata 25498748  T
Q  131 tatcattatactcttctccaaattagca 158  Q
    ||||   |||||||||||||||||||||    
T  25498747 tatctccatactcttctccaaattagca 25498720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 571058 - 571209
Alignment:
Q  36 acaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtttatca 135  Q
    |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||| ||| || |||||||| | ||| | ||||     
T  571058 acaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacggtgactctgtagaaatatatgatatatct 571155  T
Q  136 ttatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
      ||||||||||||||||||||||   ||||||   |||||| ||||||||||||||    
T  571156 ccatactcttctccaaattagcagctcttgaga---tatcttcatattgagttgttg 571209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 26457324 - 26457373
Alignment:
Q  143 cttctccaaattagcagtgtttgagatattatctttatattgagttgttg 192  Q
    ||||||||||| ||||||| ||||||||||| ||| ||||||||||||||    
T  26457324 cttctccaaatgagcagtgcttgagatattaccttcatattgagttgttg 26457373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 5998005 - 5997947
Alignment:
Q  135 attatactcttctccaaattagcagtgtttgagatattatctttatattgagttgttgc 193  Q
    |||||||||||||| ||||||  |||||| ||||||||||||| | || ||||||||||    
T  5998005 attatactcttctctaaattattagtgttagagatattatcttcacatcgagttgttgc 5997947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 571231 - 571272
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  571231 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 571272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 16648035 - 16647994
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  16648035 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 16647994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 17622396 - 17622355
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  17622396 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 17622355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 25498667 - 25498626
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  25498667 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 25498626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 32148089 - 32148048
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  32148089 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 32148048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 42162802 - 42162843
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  42162802 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 42162843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 42208520 - 42208479
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  42208520 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 42208479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 1525523 - 1525397
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||| ||||||  | ||| ||||||| || | |   ||| ||||||  |||||||||||||| ||||||||||||| ||| |     
T  1525523 taaagacaattatatatgagatgaagaagtttaaacaatcttttatgcaag--ttactcaaaatctttacttgacagtgactttgtagaaagatatgata 1525426  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  1525425 tatctccatactcttctccaaattagcag 1525397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 7910332 - 7910458
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  7910332 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 7910429  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  7910430 tatctccatactcttctccaaattagcag 7910458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 22430138 - 22430012
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  22430138 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 22430041  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  22430040 tatctccatactcttctccaaattagcag 22430012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 22435732 - 22435606
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||| ||| || |||||||||| ||| |     
T  22435732 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacggtgactctgtagaaagatatgata 22435635  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  22435634 tatctccatactcttctccaaattagcag 22435606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 17319882 - 17320040
Alignment:
Q  29 cgtaaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatgg 128  Q
    |||||| ||||||||||||| ||||| ||| ||| |||||||||| || |  || |||| |||||  |||||||||| ||| || |||||||||| ||||    
T  17319882 cgtaaagacaattatatatgtgacgaggaaggtctaataatcttttatgc--tagttatccaaaatctttacttgacggtgactatgtagaaagatatgg 17319979  T
Q  129 tttatcattatactcttctccaaattagcagtgtttgagatattatctttatattgagttgt 190  Q
    |  ||| | || ||||| |||||| |||  ||  |||||||||| |||| ||||||||||||    
T  17319980 tacatcttcatgctctt-tccaaactagtggttcttgagatattgtcttcatattgagttgt 17320040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 43776782 - 43776659
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |||   ||| |||||| ||||||||||  ||| || |||||||||| ||| |     
T  43776782 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatatttacttgaaggtgactctgtagaaagatatgata 43776685  T
Q  131 tatcattatactcttctccaaattag 156  Q
    ||||   |||||||||||||||||||    
T  43776684 tatctccatactcttctccaaattag 43776659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 636072 - 635946
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||| ||| || |||||||| | ||| |     
T  636072 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacggtgactctgtagaaatatatgata 635975  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  635974 tatctccatactcttctccaaattagcag 635946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Complemental strand, 14898573 - 14898447
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||| ||| || |||||||| | ||| |     
T  14898573 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacggtgactctgtagaaatatatgata 14898476  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  14898475 tatctccatactcttctccaaattagcag 14898447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 16443699 - 16443746
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatac 78  Q
    |||| ||||| ||||||||||||||||| |||||||||||||| ||||    
T  16443699 taaagacaatcatatatgagacgaagaaagtcaaataatcttttatac 16443746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 635894 - 635853
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  635894 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 635853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 1525346 - 1525305
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  1525346 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 1525305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 7910510 - 7910551
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  7910510 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 7910551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 14898395 - 14898354
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  14898395 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 14898354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 22429960 - 22429919
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  22429960 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 22429919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 22435554 - 22435513
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  22435554 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 22435513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 34574025 - 34574074
Alignment:
Q  24 acccacgtaaaaacaattatatatgagacgaagaatgtcaaataatcttt 73  Q
    |||| |||||| ||||||||||| |||| |||||||||||| ||||||||    
T  34574025 accctcgtaaagacaattatatacgagatgaagaatgtcaattaatcttt 34574074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 43776604 - 43776563
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  43776604 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 43776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 12966 - 13085
Alignment:
Q  38 aattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtttatcatt 137  Q
    |||||||||||||||||||||  | ||| ||||||| || |||   ||| ||||||  |||||||||||||| || |||||||||| ||  | ||||       
T  12966 aattatatatgagacgaagaagtttaaacaatcttttatgctag--ttactcaaaatctttacttgacagtgactctgtagaaagatataatatatcccc 13063  T
Q  138 atactcttctccaaattagcag 159  Q
    ||||||||||||||||||||||    
T  13064 atactcttctccaaattagcag 13085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 346040 - 346166
Alignment:
Q  31 taaaaacaattatatatgagacgaagaatgtcaaataatctttcatactataattattcaaaaaatttacttgacagtgtctttgtagaaagaaatggtt 130  Q
    |||| |||||||||||||||||||||||  | ||| ||||||| || |  || ||| ||||||  |||||||||| ||| || |||||||| | ||| |     
T  346040 taaagacaattatatatgagacgaagaagtttaaacaatcttttatgc--tagttactcaaaatctttacttgacggtgactctgtagaaatatatgata 346137  T
Q  131 tatcattatactcttctccaaattagcag 159  Q
    ||||   ||||||||||||||||||||||    
T  346138 tatctccatactcttctccaaattagcag 346166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 346218 - 346259
Alignment:
Q  207 agaaaaccacaagtttcttgtatgtgtaaaattttaatcctt 248  Q
    ||||||||||||||||||||||||||| ||||  ||||||||    
T  346218 agaaaaccacaagtttcttgtatgtgtgaaatcataatcctt 346259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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