View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14396_high_9 (Length: 244)
Name: NF14396_high_9
Description: NF14396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14396_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 16694825 - 16694973
Alignment:
| Q |
79 |
caacataatttattcttaacaacacatacaaattaagttcaacaaagaaattattttgaaggaaataaattaacaaacttttaacaaaaaacattgtaag |
178 |
Q |
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| T |
16694825 |
caacataatttattct-aacaacacatacaaattaagttcaacaaagaaattattttgaaggaaataaattaacaaacttttaacaaaaaacattgtaag |
16694923 |
T |
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| Q |
179 |
ttgtaacaatttaagtttgactttgtaagttgaagagataaaataacatg |
228 |
Q |
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| T |
16694924 |
ttgtaacaatttaagtttgactttgtaagttgaagagataaaataacatg |
16694973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 16694531 - 16694596
Alignment:
| Q |
12 |
atgaatgggtccatgtagaggttttgtttaagcatcaaatgaagaaaacactccttatagaaagtg |
77 |
Q |
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| T |
16694531 |
atgaatgggtccatgtagaggttttgtttaagcatcaaatgaagaaaacactccttatagaaagtg |
16694596 |
T |
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