View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14396_low_11 (Length: 235)

Name: NF14396_low_11
Description: NF14396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14396_low_11
NF14396_low_11
[»] chr4 (7 HSPs)
chr4 (3-89)||(26058040-26058126)
chr4 (1-89)||(26081706-26081794)
chr4 (161-223)||(26058198-26058260)
chr4 (1-85)||(53981565-53981649)
chr4 (1-85)||(20193197-20193281)
chr4 (7-85)||(19569972-19570050)
chr4 (19-82)||(2924778-2924841)
[»] chr7 (7 HSPs)
chr7 (1-85)||(42208378-42208462)
chr7 (1-85)||(16647893-16647977)
chr7 (1-85)||(17622254-17622338)
chr7 (1-85)||(25498525-25498609)
chr7 (1-84)||(42162860-42162943)
chr7 (1-85)||(32147947-32148031)
chr7 (19-75)||(34325809-34325865)
[»] chr5 (5 HSPs)
chr5 (1-85)||(30958202-30958286)
chr5 (1-85)||(28367586-28367670)
chr5 (20-85)||(1532280-1532345)
chr5 (7-54)||(17945250-17945297)
chr5 (19-82)||(18080545-18080608)
[»] chr3 (6 HSPs)
chr3 (1-85)||(13981261-13981345)
chr3 (1-85)||(2169256-2169340)
chr3 (1-85)||(13990302-13990386)
chr3 (1-85)||(23343846-23343930)
chr3 (7-85)||(9725235-9725313)
chr3 (7-83)||(17032592-17032667)
[»] chr2 (11 HSPs)
chr2 (1-85)||(7910568-7910652)
chr2 (1-85)||(22429818-22429902)
chr2 (1-85)||(22435412-22435496)
chr2 (1-85)||(635752-635836)
chr2 (1-85)||(14898253-14898337)
chr2 (1-84)||(1525205-1525288)
chr2 (19-85)||(19088959-19089025)
chr2 (1-85)||(43776462-43776546)
chr2 (21-85)||(21290151-21290215)
chr2 (2-86)||(34574193-34574277)
chr2 (21-73)||(17320147-17320199)
[»] chr1 (5 HSPs)
chr1 (1-85)||(15716094-15716178)
chr1 (1-85)||(33493541-33493625)
chr1 (1-85)||(16168231-16168314)
chr1 (19-85)||(145991-146057)
chr1 (1-85)||(15552341-15552425)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-85)||(346276-346360)
[»] chr8 (5 HSPs)
chr8 (8-84)||(32722302-32722378)
chr8 (7-54)||(17909242-17909289)
chr8 (19-85)||(28348944-28349010)
chr8 (19-74)||(23429045-23429100)
chr8 (20-70)||(34192014-34192064)
[»] scaffold0461 (1 HSPs)
scaffold0461 (8-74)||(13202-13268)
[»] chr6 (2 HSPs)
chr6 (2-54)||(17270798-17270850)
chr6 (1-85)||(19441733-19441817)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 26058040 - 26058126
Alignment:
Q  3 ctttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttgtacc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26058040 ctttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttgtacc 26058126  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26081706 - 26081794
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttgtacc 89  Q
    ||||| ||||| | |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  26081706 cacttccttgacgcagtcctaacattttcaaatgatcggttgatattgttgtttctctaaaattcaaattgtatacatgactttgtacc 26081794  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 26058198 - 26058260
Alignment:
Q  161 tagtgccctcatttggataggtagatgtttcactagctaatgcagaaggcaaggtagaaaatg 223  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26058198 tagtaccctcatttggataggtagatgtttcactagctaatgcagaaggcaaggtagaaaatg 26058260  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 53981649 - 53981565
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  53981649 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 53981565  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20193197 - 20193281
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||| ||||||| ||||||||||||||||| ||||| || | ||||||||  |||||||||    
T  20193197 cacttccttgacgtagtgctaacattttgaaatgatcggatgatattgttgtttctctaagataccaattgtatgtttgactttg 20193281  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 19570050 - 19569972
Alignment:
Q  7 cttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||||||||| ||||||||||||||||||  | |||||||||||||| ||||| || ||||||  || ||||||||||    
T  19570050 cttgatgtagtgctaacattttcaaatgatcaggtgatattgttgtttctctaagatgcaaatttaatgcttgactttg 19569972  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 2924778 - 2924841
Alignment:
Q  19 ctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgact 82  Q
    |||||||||||||||||| ||||||||||||| |||   ||| || |||||||||| |||||||    
T  2924778 ctaacattttcaaatgatcggatgatattgttatttcattaagatacaaattgtatgcttgact 2924841  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 42208462 - 42208378
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  42208462 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 42208378  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16647977 - 16647893
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  16647977 cacttccttgacgtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 16647893  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 17622338 - 17622254
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  17622338 cacttccttgacgtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 17622254  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 25498609 - 25498525
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  25498609 cacttccttgacgtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 25498525  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 42162860 - 42162943
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgacttt 84  Q
    ||||| ||||||||||| |||||||||||||| ||| |||||||| |||||||| ||||| || ||||||||||  ||||||||    
T  42162860 cacttccttgatgtagtgctaacattttcaaacgatcggatgatagtgttgtttctctaagatacaaattgtatgtttgacttt 42162943  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 32148031 - 32147947
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||| ||||||| |||| |||||||||||| ||||| || ||||||||||  |||||||||    
T  32148031 cacttccttgacgtagtgctaacattttgaaatgatcggataatattgttgtttctctaagatacaaattgtatgtttgactttg 32147947  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 34325865 - 34325809
Alignment:
Q  19 ctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtata 75  Q
    |||||||||||||||||| |||||||| |||||||| | ||| || |||| ||||||    
T  34325865 ctaacattttcaaatgatcggatgatactgttgtttctttaagatacaaagtgtata 34325809  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 30958202 - 30958286
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  30958202 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 30958286  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 28367586 - 28367670
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||| ||||||| ||||| || ||||||||||  |||||||||    
T  28367586 cacttccttgacgtagtgctaacattttcaaatgatcggatgatatcgttgtttctctaagatacaaattgtatgtttgactttg 28367670  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 1532280 - 1532345
Alignment:
Q  20 taacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  1532280 taacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 1532345  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 17945297 - 17945250
Alignment:
Q  7 cttgatgtagtcctaacattttcaaatgatgggatgatattgttgttt 54  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  17945297 cttgatgtagtgctaacattttaaaatgataggatgatattgttgttt 17945250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 18080545 - 18080608
Alignment:
Q  19 ctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgact 82  Q
    |||||||||||||||||| |||||||| |||||||| | ||| || |||||||||| |||||||    
T  18080545 ctaacattttcaaatgatcggatgatactgttgtttctttaagatacaaattgtatgcttgact 18080608  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13981261 - 13981345
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  13981261 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 13981345  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 2169256 - 2169340
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  2169256 cacttccttgacgtagtgctaacatattcaaatgatcggatgatattgttgtttctctaatatacaaattgtatgtttgactttg 2169340  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13990386 - 13990302
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  13990386 cacttccttgacgtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 13990302  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 23343930 - 23343846
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  23343930 cacttccttgacgtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 23343846  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 9725235 - 9725313
Alignment:
Q  7 cttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||||||||||||||||  |||||||| ||||||| ||||| || ||||||||||  |||||||||    
T  9725235 cttgacgtagtgctaacattttcaaatgatcagatgatatcgttgtttctctaagatacaaattgtatgtttgactttg 9725313  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 17032667 - 17032592
Alignment:
Q  7 cttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactt 83  Q
    ||||||||||| ||||||||||| ||||||   ||||||||||| ||| ||||| || ||||||||||  |||||||    
T  17032667 cttgatgtagtgctaacattttc-aatgatcaaatgatattgttatttctctaagatacaaattgtatgtttgactt 17032592  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7910568 - 7910652
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  7910568 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 7910652  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22429902 - 22429818
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  22429902 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 22429818  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22435496 - 22435412
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  22435496 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 22435412  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 635836 - 635752
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  635836 cacttccttgacgtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 635752  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 14898337 - 14898253
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| ||||||| |||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  14898337 cacttccttgacgtagtgctaacatattcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 14898253  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 1525288 - 1525205
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgacttt 84  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| |||||  | ||||||||||  ||||||||    
T  1525288 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagctacaaattgtatgtttgacttt 1525205  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 19089025 - 19088959
Alignment:
Q  19 ctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    |||||||||||||||||| ||||||||||||||||| | ||| || |||||||||| ||||||||||    
T  19089025 ctaacattttcaaatgatcggatgatattgttgtttctttaagatacaaattgtatgcttgactttg 19088959  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 43776546 - 43776462
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| |||||||||  |||||| ||||| || ||||||||||  |||||||||    
T  43776546 cacttccttgacgtagtgctaacattttcaaatgatcggatgatatcattgtttctctaagatacaaattgtatgtttgactttg 43776462  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 21290151 - 21290215
Alignment:
Q  21 aacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    |||||||||||||||| ||||||||||||||||| | ||| || ||||||||||  |||||||||    
T  21290151 aacattttcaaatgatcggatgatattgttgtttctgtaagatacaaattgtatgtttgactttg 21290215  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 34574193 - 34574277
Alignment:
Q  2 actttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttgt 86  Q
    |||| ||||||||||| ||||||||| ||||||||  ||||||||||| |||| ||||| || ||| |||||| ||||| |||||    
T  34574193 acttccttgatgtagtgctaacatttacaaatgatcagatgatattgtagtttctctaagatacaagttgtatgcttgattttgt 34574277  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 17320147 - 17320199
Alignment:
Q  21 aacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgta 73  Q
    |||||||  ||||||| ||||||||||||||||| ||||| || |||||||||    
T  17320147 aacatttctaaatgatcggatgatattgttgtttctctaagatacaaattgta 17320199  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 15716178 - 15716094
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  15716178 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 15716094  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 33493541 - 33493625
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  33493541 cacttccttgacgtagtgctaacattttcaaatgatcggatgatattgttgtttctctaagatacaaattgtatgtttgactttg 33493625  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16168314 - 16168231
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    |||| |||||||| |||  ||||||||||||||||| |||||||||||||| |||| ||| || |||||||||| ||||||||||    
T  16168314 cactctcttgatgcagtgttaacattttcaaatgatcggatgatattgttg-ttttataagatacaaattgtatgcttgactttg 16168231  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 145991 - 146057
Alignment:
Q  19 ctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    |||||||||||||||||| |||||||| || ||||| | ||| || |||||||||| ||||||||||    
T  145991 ctaacattttcaaatgatcggatgatactgctgtttctttaagatacaaattgtatgcttgactttg 146057  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 15552425 - 15552341
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| |||||||| ||  || |||||||||| ||| | ||||||||||| ||| |||||  | |||||||||||||||||||||    
T  15552425 cacttccttgatgtggtgttagcattttcaaacgattgaatgatattgttctttctctaaggtacaaattgtatacttgactttg 15552341  T

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Target: scaffold0004 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 346276 - 346360
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    ||||| ||||| ||||| |||||||||||||||||| ||||||||| ||||||| ||||| || ||||||||||  |||||||||    
T  346276 cacttccttgacgtagtgctaacattttcaaatgatcggatgatatcgttgtttctctaagatacaaattgtatgtttgactttg 346360  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 32722378 - 32722302
Alignment:
Q  8 ttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgacttt 84  Q
    |||||||||| |||| ||||||||||||| ||  |||||| |||||| |||||||| |||||||||| |||||||||    
T  32722378 ttgatgtagtgctaatattttcaaatgatcgggcgatatttttgtttctctaaaatacaaattgtatgcttgacttt 32722302  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 17909289 - 17909242
Alignment:
Q  7 cttgatgtagtcctaacattttcaaatgatgggatgatattgttgttt 54  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  17909289 cttgatgtagtgctaacattttcaaatgataggatgatattgttgttt 17909242  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 28348944 - 28349010
Alignment:
Q  19 ctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    |||||||||||||||||| |||||||| |||||||| | ||| || |||||||||| ||||||||||    
T  28348944 ctaacattttcaaatgatcggatgatactgttgtttctttaagatacaaattgtatgcttgactttg 28349010  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 23429100 - 23429045
Alignment:
Q  19 ctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtat 74  Q
    |||||||||||||||||| ||||||||||||||||| | ||| || ||||||||||    
T  23429100 ctaacattttcaaatgatcggatgatattgttgtttctttaagatacaaattgtat 23429045  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 34192014 - 34192064
Alignment:
Q  20 taacattttcaaatgatgggatgatattgttgtttttctaaaattcaaatt 70  Q
    ||||||||  ||||||| ||||||||||||||||| |||||||| ||||||    
T  34192014 taacatttctaaatgatcggatgatattgttgtttctctaaaatacaaatt 34192064  T

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Target: scaffold0461 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 13202 - 13268
Alignment:
Q  8 ttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtat 74  Q
    |||| ||||| ||||||||||||||||||  |||||||||||||||| ||||| || ||||||||||    
T  13202 ttgacgtagtgctaacattttcaaatgatcagatgatattgttgtttctctaagatacaaattgtat 13268  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 17270798 - 17270850
Alignment:
Q  2 actttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgttt 54  Q
    |||| ||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  17270798 acttccttgatgtagtgctaacattttcaattgatcggatgatattgttgttt 17270850  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19441733 - 19441817
Alignment:
Q  1 cactttcttgatgtagtcctaacattttcaaatgatgggatgatattgttgtttttctaaaattcaaattgtatacttgactttg 85  Q
    |||||||||||||| ||  |||||||||||||  || || |||||||||| ||| |||||  | |||||||| | ||||||||||    
T  19441733 cactttcttgatgtggtgttaacattttcaaacaattgggtgatattgttctttctctaaggtacaaattgtgtgcttgactttg 19441817  T

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