View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14396_low_2 (Length: 394)

Name: NF14396_low_2
Description: NF14396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14396_low_2
NF14396_low_2
[»] chr3 (2 HSPs)
chr3 (5-391)||(38396678-38397064)
chr3 (234-311)||(249344-249421)
[»] chr8 (2 HSPs)
chr8 (193-381)||(34830865-34831053)
chr8 (251-381)||(12811961-12812091)
[»] chr7 (2 HSPs)
chr7 (203-381)||(5229942-5230120)
chr7 (248-359)||(28470181-28470292)
[»] chr6 (2 HSPs)
chr6 (204-381)||(5652861-5653038)
chr6 (251-391)||(22611461-22611601)
[»] chr5 (1 HSPs)
chr5 (206-366)||(20543481-20543641)
[»] chr4 (3 HSPs)
chr4 (233-381)||(45671372-45671520)
chr4 (245-381)||(45690254-45690390)
chr4 (210-336)||(42506600-42506726)
[»] chr2 (3 HSPs)
chr2 (236-311)||(5546381-5546456)
chr2 (213-381)||(25524794-25524962)
chr2 (270-381)||(30642907-30643018)
[»] chr1 (1 HSPs)
chr1 (234-345)||(46039607-46039718)


Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 391
Target Start/End: Complemental strand, 38397064 - 38396678
Alignment:
Q  5 caaaaactcaaacagtggaaaaagaaattcagttttttcatataataaacaacaaaatagatacacaaaccttgtaacaagaatcaaaagcatttagtag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38397064 caaaaactcaaacagtggaaaaagaaattcagttttttcatataataaacaacaaaatagatacacaaaccttgtaacaagaatcaaaagcatttagtag 38396965  T
Q  105 agatgtttattaataacgttctttaactatatatgttcagttagacttaattattaatcattctcatttgaatgaatacgtatttattataccttgaagt 204  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38396964 agatgtttattaataatgttctttaactatatatgttaagttagacttaattattaatcattctcatttgaatgaatacgtatttattataccttgaagt 38396865  T
Q  205 gctgcaaaactcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagacca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38396864 gctgcaaaactcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagacca 38396765  T
Q  305 tttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaattctcttcaactctactcttcctcttcccatctttcatctc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38396764 tttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaattctcttcaactctactcttcctcttcccatctttcttctc 38396678  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 249344 - 249421
Alignment:
Q  234 tggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttc 311  Q
    |||||||||| ||||||||||| || |||||||| | ||| || |||||||||||||| |||| ||| ||||| ||||    
T  249344 tggagaagacaatgagagcaacttcagcatcacacaaaactgatagttcataagctttcttcagaagtccattccttc 249421  T

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Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 193 - 381
Target Start/End: Original strand, 34830865 - 34831053
Alignment:
Q  193 ataccttgaagtgctgcaaaactcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagctttt 292  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||||    
T  34830865 ataccttgaactgctacaaaactcatagagttttcctctgttggagaagatgataagagcaacttcagcatcacaaagaacagaaagttcataagctttt 34830964  T
Q  293 ttcaaaagaccatttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaattctcttcaactctactcttcctcttcccat 381  Q
    ||||||||||| || |||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  34830965 ttcaaaagaccgttccttcgtttagcgaaggtaacttgtctgttgattttgttctcaattctcttcaactcaactcttcctcttcccat 34831053  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 381
Target Start/End: Original strand, 12811961 - 12812091
Alignment:
Q  251 gcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaa 350  Q
    ||||| || |||||||| |||||||| |||||||||||||| || |  | ||||||||||| |||||  || || || || | ||| || |||||||| |    
T  12811961 gcaacttcagcatcacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctgccggtttattttgttctcta 12812060  T
Q  351 ttctcttcaactctactcttcctcttcccat 381  Q
    |||||||||| || |||||||||||||||||    
T  12812061 ttctcttcaattcaactcttcctcttcccat 12812091  T

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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 203 - 381
Target Start/End: Complemental strand, 5230120 - 5229942
Alignment:
Q  203 gtgctgcaaaactcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagac 302  Q
    ||||| ||||| ||||| || ||||| | | ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| || | |||||    
T  5230120 gtgctacaaaattcataaagctttccacgagtggagaagatgataagagcaacctcagcatcacaaagaacagaaagttcataagctttcttaagaagac 5230021  T
Q  303 catttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaattctcttcaactctactcttcctcttcccat 381  Q
    |||||||||  || ||||| |||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||    
T  5230020 catttcttctcttagcaaatgtaacttgtctgtttatcttgttctctatcctcttcaactcaactcttcctcttcccat 5229942  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 359
Target Start/End: Complemental strand, 28470292 - 28470181
Alignment:
Q  248 agagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtctgttgatcttgttct 347  Q
    ||||||| ||| |||||||| ||||| || |||||||| ||||||||||  | ||||||||||| |||||  || |||||||| | |||||| ||||| |    
T  28470292 agagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgccggttgattttgtttt 28470193  T
Q  348 caattctcttca 359  Q
    | || |||||||    
T  28470192 ctatcctcttca 28470181  T

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Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 204 - 381
Target Start/End: Complemental strand, 5653038 - 5652861
Alignment:
Q  204 tgctgcaaaactcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagacc 303  Q
    |||| ||||||||||| || || ||||||||||||||||  || |||||||| || ||||||||||||||||| | |||||||||||| || | ||| ||    
T  5653038 tgctacaaaactcataaagcttgcctctattggagaagataataagagcaacttcagcatcacaaagaacagataattcataagctttcttaagaagtcc 5652939  T
Q  304 atttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaattctcttcaactctactcttcctcttcccat 381  Q
    ||||||||  |||||||| || ||||||||||| ||||| ||||| || || ||||| || |||||||||||||||||    
T  5652938 atttcttctctttgcaaatgttacttgtctgtttatcttattctctatccttttcaattccactcttcctcttcccat 5652861  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 391
Target Start/End: Complemental strand, 22611601 - 22611461
Alignment:
Q  251 gcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaa 350  Q
    ||||| || |||||||| |||||| |||| ||| | ||||| ||||| |  ||| ||||||  ||||  || || ||||| || |||||||| ||||| |    
T  22611601 gcaacttcagcatcacatagaacacaaagctcaaaggctttcttcaacaatccacttcttctctttgagaatgttacttgcctattgatcttattctcta 22611502  T
Q  351 ttctcttcaactctactcttcctcttcccatctttcatctc 391  Q
    |||||| |||| ||||||||||||||||||| |||| ||||    
T  22611501 ttctctccaacactactcttcctcttcccatttttcttctc 22611461  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 366
Target Start/End: Original strand, 20543481 - 20543641
Alignment:
Q  206 ctgcaaaactcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccat 305  Q
    ||||||||||||||||||||||| |   | ||||| |  |||||||||||||| ||||||||||| | ||| ||||||||||| || ||||  |  ||||    
T  20543481 ctgcaaaactcatagagttttccacggctagagaaaataatgagagcaacctcagcatcacaaaggagagagagttcataagccttcttcagcattccat 20543580  T
Q  306 ttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaattctcttcaactctac 366  Q
    ||||||  |||||||| |||||||| |  || || ||||||||||| ||||| | ||||||    
T  20543581 ttcttctctttgcaaatgtaacttgacgatttattttgttctcaatcctctttagctctac 20543641  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 381
Target Start/End: Complemental strand, 45671520 - 45671372
Alignment:
Q  233 ttggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtc 332  Q
    |||||||||| ||| |||||||| || |||||||||||||| |||||||||||||| || || |  | |||||||||||  || ||||| || |||||||    
T  45671520 ttggagaagatgataagagcaacttcagcatcacaaagaactgaaagttcataagccttcttgagtacaccatttcttctcttagcaaatgtgacttgtc 45671421  T
Q  333 tgttgatcttgttctcaattctcttcaactctactcttcctcttcccat 381  Q
    | || |  |||||||| |||||||| |  || ||||| |||||||||||    
T  45671420 tattaactttgttctctattctctttagttcaactctccctcttcccat 45671372  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 381
Target Start/End: Complemental strand, 45690390 - 45690254
Alignment:
Q  245 atgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtctgttgatcttgt 344  Q
    ||||||||||| || ||||||||||||||||| |  || |  ||||| ||||| | ||||   ||||  |||| ||| || |||||||| ||||||||||    
T  45690390 atgagagcaacttcagcatcacaaagaacagagatctcttgtgctttcttcaacaaaccagaccttctctttgaaaaagtgacttgtctattgatcttgt 45690291  T
Q  345 tctcaattctcttcaactctactcttcctcttcccat 381  Q
    ||||||| ||||||||||  |||||||| || |||||    
T  45690290 tctcaatcctcttcaactgcactcttcccctccccat 45690254  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 336
Target Start/End: Original strand, 42506600 - 42506726
Alignment:
Q  210 aaaactcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttct 309  Q
    |||||||||||||||| ||| |  | |||||||||||||| || || || ||||||||||| || ||||||||| | || ||||| |  || ||||||||    
T  42506600 aaaactcatagagtttccctgtggtagagaagacgatgagtgcgacttcagcatcacaaagcactgaaagttcaaaggcctttttaagcagtccatttct 42506699  T
Q  310 tcgttttgcaaaggtaacttgtctgtt 336  Q
    ||  ||||  || || |||||||||||    
T  42506700 tctctttgagaaagttacttgtctgtt 42506726  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 5546456 - 5546381
Alignment:
Q  236 gagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttc 311  Q
    |||||||| || |||||||| |||||||||||||||||||| | |||||| ||||| ||||| | |||||||||||    
T  5546456 gagaagactataagagcaacttctgcatcacaaagaacagataattcatatgctttcttcaacaaaccatttcttc 5546381  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 381
Target Start/End: Complemental strand, 25524962 - 25524794
Alignment:
Q  213 actcatagagttttcctctattggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcg 312  Q
    |||||||||| |||||| | ||||||||||| || |||||||| || ||||||||||| ||||| |  |||| |||||| || |  | ||||  |||||     
T  25524962 actcatagagctttcctttgttggagaagacaataagagcaacttcagcatcacaaagcacagagatctcatgagctttcttgagtaaaccagatcttct 25524863  T
Q  313 ttttgcaaaggtaacttgtctgttgatcttgttctcaattctcttcaactctactcttcctcttcccat 381  Q
     |||| ||| || ||||| || |||||||||||||||||  ||||||| |  || |||||||| |||||    
T  25524862 ctttgaaaaagttacttgcctattgatcttgttctcaatcttcttcaattgcacccttcctctccccat 25524794  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 270 - 381
Target Start/End: Original strand, 30642907 - 30643018
Alignment:
Q  270 gaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtctgttgatcttgttctcaattctcttcaactctactct 369  Q
    ||||||| ||||||||||||||||| |  | |||||||||||  ||||  || ||  ||||   ||| || |||||||| ||||||||||| || |||||    
T  30642907 gaacagacagttcataagcttttttgagcaaaccatttcttctctttgagaaagttgcttgctggtttattttgttctctattctcttcaattcaactct 30643006  T
Q  370 tcctcttcccat 381  Q
    ||||||||||||    
T  30643007 tcctcttcccat 30643018  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 46039607 - 46039718
Alignment:
Q  234 tggagaagacgatgagagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgtct 333  Q
    ||||||||| ||| |||||||| || |||||||| |  |||||||||||| ||||||| ||||| | |||| ||||||  |||| ||| || ||||||||    
T  46039607 tggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttgaaaatgttacttgtct 46039706  T
Q  334 gttgatcttgtt 345  Q
     |||||||||||    
T  46039707 attgatcttgtt 46039718  T

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