View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14396_low_3 (Length: 299)
Name: NF14396_low_3
Description: NF14396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14396_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 38121505 - 38121789
Alignment:
| Q |
1 |
ctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaattttattgtttcaaacatatagtgttctcctgcaatcacattgta |
100 |
Q |
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| T |
38121505 |
ctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaattttattgtttcaaagatatagtgttctcctgcaatcacattgta |
38121604 |
T |
|
| Q |
101 |
gatgagtttgttgtgaacctgattactgttccttttgatgattaagagaaagactaataggtatgaatgtatattatagagaaggtgcaggtggcatact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38121605 |
gatgagtttgttgtgaacctgattactgttccttttgatgattaagagaaagactaataggtatgaatgtatattacagagaaggtgcaggtggcatact |
38121704 |
T |
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| Q |
201 |
agcatcatcggaggtgtgcaatgccctgcgactttgacgcccaaaatttatgacttccatgaatgtatagattggcacccctttg |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121705 |
agcatcatcggaggtgtgcaatgccctgcgactttgacgcccaaaatttatgacttccatgaatgtatagattggcacccctttg |
38121789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 38133596 - 38133703
Alignment:
| Q |
1 |
ctttaggatttccagtagtaccacttgtgtacacaagagtagcaatgtcatccaattttattgtttcaaacatatagtgttctcctgcaatcacattgta |
100 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| |||||| | |||| |||||||||||| |
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| T |
38133596 |
cttttggatttccagtagtaccacttgtgtatacaagagtagcaatgtcatcagattttattgcttcaaacacatagtgcttccctgtaatcacattgta |
38133695 |
T |
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| Q |
101 |
gatgagtt |
108 |
Q |
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| T |
38133696 |
gatgagtt |
38133703 |
T |
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