View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14396_low_7 (Length: 262)
Name: NF14396_low_7
Description: NF14396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14396_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 40365991 - 40366235
Alignment:
| Q |
18 |
gtaactgccttcacagtagtaaattctaagcttatcttcccttcaattaggtatgatacttgagcaacattcaagtactgtttgtttgttccacaagtta |
117 |
Q |
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| T |
40365991 |
gtaactgccttcacagtagtaaattctaagcttatcttcccttcaattaggtatgatacttgagcaacattcaagtactgtttgtt----ccacaagtta |
40366086 |
T |
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| Q |
118 |
cctagaattgggtaggtagtgag----tgttgagagtgatctgtttccaaattaaccatgtttgaaagattaaattaattaagctataaaagaaactaat |
213 |
Q |
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| T |
40366087 |
cctagaattgtctttgcatttgggtactgttgagagtgatctatgtccaaataaaccatgtttgaaagacttgattaattaagctataaaagaaactaat |
40366186 |
T |
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| Q |
214 |
tgtgtcctattaatgttttaattcttttgtcttaacctactgatcaacc |
262 |
Q |
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| T |
40366187 |
tgtgtcctattaatgttttaattcttttgtcttaacctaccgatcaacc |
40366235 |
T |
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