View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14396_low_8 (Length: 254)
Name: NF14396_low_8
Description: NF14396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14396_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11471251 - 11471487
Alignment:
| Q |
1 |
atttttctcttttacgtcaaatggtatatagttcggtgcactataacaccattattaacatccttcaaaatgaagtttgattttgagtgaaaaataacat |
100 |
Q |
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| T |
11471251 |
atttttctctttaa-gtcaaatggtatatagttcggtgcactataacaccattat---catccttcaaaacgaagtttgattttg-gtgaaaaataacat |
11471345 |
T |
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| Q |
101 |
tccaattgttgat-nnnnnnnnnnnnnnnttagttacatgttacatattttccttctataa-tttctattaggacaattacctctccggatcctttaaat |
198 |
Q |
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| T |
11471346 |
tccaattgttgataaaaaaatataaaaaattagttacatgttacatattttacttctttaatttttttttaggccaaatacatcccggggtcttttaaat |
11471445 |
T |
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| Q |
199 |
tttacatttgtactatatcaatgttctaaccgaatccatttt |
240 |
Q |
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| T |
11471446 |
tttacatttgtactatatcaatgttctaaccgaatccatttt |
11471487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 11477937 - 11477978
Alignment:
| Q |
59 |
catccttcaaaatgaagtttgattttgagtgaaaaataacat |
100 |
Q |
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| T |
11477937 |
catccttcaaaatgaagtttgattttgagtgaaaaataacat |
11477978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 11484552 - 11484600
Alignment:
| Q |
59 |
catccttcaaaatgaagtttgattttgagtgaaaaataacattccaatt |
107 |
Q |
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| T |
11484552 |
catccttcaaaatgaagtttgatttttcgtgaaaaatgacattcgaatt |
11484600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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