View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14397_high_10 (Length: 286)
Name: NF14397_high_10
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14397_high_10 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 31297051 - 31296778
Alignment:
| Q |
13 |
aaaataggttgattaccccaaatcttaaacaaatcaatattatgtgaaacaattggtttctcagatttagcttcattcaatttgcttaacctaacttcca |
112 |
Q |
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| T |
31297051 |
aaaataggttgattaccccaaatcttaaacaaatcaatattatgtgaaacaattggtttctcagatttagcttcattcaatttgcttaacctaacttcca |
31296952 |
T |
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| Q |
113 |
atctatgtaatccattatcataatcaacccaagatttcaacttttcaccactattcaaaaccaaattcgatttagaaacatttgcaacagcaacagatac |
212 |
Q |
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| T |
31296951 |
atctatgtaatccattatcataatcaacccaagatttcaacttttcaccactattcaaaaccaaattcgatttagaaacatttgcaacagcaacagatac |
31296852 |
T |
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| Q |
213 |
aagacttcctagattaataccaacatgattagcattcagatcaccaacattatcatccttcgaggtatcgaatt |
286 |
Q |
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| T |
31296851 |
aagacttcctagattaataccaacatgattagcattcagatcaccaacattatcatccttcgaggtatcgaatt |
31296778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 13358460 - 13358527
Alignment:
| Q |
141 |
ccaagatttcaacttttcaccactattcaaaaccaaattcgatttagaaacatttgcaacagcaacaga |
209 |
Q |
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| T |
13358460 |
ccaagatttcatcttttcacagctatccagaaccaaattctattttgaaac-tttgcaacaacaacaga |
13358527 |
T |
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