View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14397_high_11 (Length: 281)
Name: NF14397_high_11
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14397_high_11 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 10174438 - 10174172
Alignment:
| Q |
15 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatga |
114 |
Q |
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| T |
10174438 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgtgtatga |
10174339 |
T |
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| Q |
115 |
cccgaaagctaccaccttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
214 |
Q |
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| T |
10174338 |
cccgaaagctaccaccttctttgtctcatttggatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
10174239 |
T |
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| Q |
215 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgtagagttagca |
281 |
Q |
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| T |
10174238 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgtagagttagca |
10174172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 1238776 - 1238525
Alignment:
| Q |
30 |
atgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatgacccgaaagctaccac |
129 |
Q |
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| T |
1238776 |
atgcattcagagatcaacaaattgaggtctatttctgaggatatttcacagtatggctttttgcatcgtgtttggttgcgtatgacacgaaagctaccac |
1238677 |
T |
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| Q |
130 |
cttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttgctcgggagggaagat |
229 |
Q |
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| T |
1238676 |
cttctttgtctcatttggatggattgaattgggaggttttgatcgtgactggtgtccctgttcgttattttcctgctttagtttgtccgggagggaagat |
1238577 |
T |
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| Q |
230 |
tattgcatccactgctctcattgagcttcattcaagtgatgtagagttagca |
281 |
Q |
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| T |
1238576 |
tattgcatccactgctttcattgagcttcatccaagtgatgtagagttagca |
1238525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 1173923 - 1174189
Alignment:
| Q |
15 |
aatattattggtgcaatgcatacagagatcaataaaatgaggtctatttctgaggatatttctcaatatggctttgtgcgtcgtgtttggttgcgtatga |
114 |
Q |
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| T |
1173923 |
aatattgttggcgccatgcattcagagatcaacaaattgaggtctatttctgatgatatttctcagtatggcttttggcaccgtgtttggttgcgtatga |
1174022 |
T |
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| Q |
115 |
cccgaaagctaccaccttctttatctcatttagatgaattgaattgggagattttgattgtgaccggtgatgatgttactgattattttgctatagtttg |
214 |
Q |
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| T |
1174023 |
cccgaaagctaccaccttctttgtctcatttggatggattgaattgggaggttttgatcgtgactggtgtccctgttacttcttttccttctttagtttg |
1174122 |
T |
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| Q |
215 |
ctcgggagggaagattattgcatccactgctctcattgagcttcattcaagtgatgtagagttagca |
281 |
Q |
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| T |
1174123 |
tccgggtgggaagattattgcatccactactttcattgagcttcatccaactgatgtagagttagca |
1174189 |
T |
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