View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14397_high_12 (Length: 242)
Name: NF14397_high_12
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14397_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 10174152 - 10174029
Alignment:
| Q |
104 |
ttgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttcatttctatgatacactgtgtgcttaatctatttgtcctcattgattt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10174152 |
ttgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttgatttctatgatagactgtgtgcttaatctatttgtcctcattgattt |
10174053 |
T |
|
| Q |
204 |
ttacgaaacagtgacgaattggat |
227 |
Q |
| |
|
|||||||||||| | ||||||||| |
|
|
| T |
10174052 |
ttacgaaacagtaaggaattggat |
10174029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 66 - 227
Target Start/End: Complemental strand, 1238427 - 1238266
Alignment:
| Q |
66 |
ttgttgaaaaaataatattggttttcttgttaattagattgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttcatttctatg |
165 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| ||||| | |||||||||||||||| ||||||||| |
|
|
| T |
1238427 |
ttgttgaaaaaataacgttggttttctcgttaattagattgcgcatattatggcacggcatggctgtgaaaggcgtacaaaggtcgagttgatttctatg |
1238328 |
T |
|
| Q |
166 |
atacactgtgtgcttaatctatttgtcctcattgatttttacgaaacagtgacgaattggat |
227 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
1238327 |
atacaccgtgtgcttaatcgatttgtcaccattgatttttaccaaacagtgaggaattggat |
1238266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 1174286 - 1174342
Alignment:
| Q |
65 |
gttgttgaaaaaataatattggttttcttgttaattagattgcgcatattatggctc |
121 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
1174286 |
gttgttgaaaaaataatgtcggttttctcgttaattagattgcacatattatggctc |
1174342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 1174378 - 1174450
Alignment:
| Q |
157 |
atttctatgatacactgtgtgcttaatctatttgtcctcattgatttttacgaaacagtgacgaattggatga |
229 |
Q |
| |
|
|||| ||||||| || |||||||||| ||||||| ||||||||||||| |||||| || ||||||||||| |
|
|
| T |
1174378 |
atttgtatgatagaccatgtgcttaattgatttgtcaccattgatttttaccaaacagcgatgaattggatga |
1174450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University