View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14397_high_13 (Length: 219)

Name: NF14397_high_13
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14397_high_13
NF14397_high_13
[»] chr1 (1 HSPs)
chr1 (16-200)||(1927882-1928067)
[»] chr2 (3 HSPs)
chr2 (16-200)||(34028435-34028620)
chr2 (76-200)||(20157255-20157379)
chr2 (16-56)||(20157379-20157419)
[»] chr6 (1 HSPs)
chr6 (76-200)||(30878312-30878436)
[»] chr7 (1 HSPs)
chr7 (76-200)||(40097556-40097679)
[»] chr3 (1 HSPs)
chr3 (26-71)||(36786402-36786447)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 1928067 - 1927882
Alignment:
Q  16 aaaataaatcttcctgcacacgttatatagttatcacatttcacttaaaaatattatagattttactgttctttagcaattttgtacaagtaannnnnnn 115  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| ||| | ||| ||||||||||||||||||||| |||||| ||||| |           
T  1928067 aaaaaaaatcttcctgcacacgttacatagttatcacatttcactttaaagttttacagattttactgttctttagcagttttgtgcaagtcattttttt 1927968  T
Q  116 -actaatatcatttttatcaagttataaagttttgtgcaagcagtaaaatatgaacaatatcattaaaatataaaatatcaaaatg 200  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1927967 tactaatatcatttttatgaagttataaagttttgtgcaagcagtaaaatatgaacaatatcattaaaatataaaatataaaaatg 1927882  T

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Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 34028620 - 34028435
Alignment:
Q  16 aaaataaatcttcctgcacacgttatatagttatcacatttcacttaaaaatattatagattttactgttctttagcaattttgtacaagtaannnnnnn 115  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| ||| | ||| ||||||||||||||||||||| |||||||||||| |           
T  34028620 aaaaaaaatcttcctgcacacgttacatagttatcacatttcactttaaagttttacagattttactgttctttagcagttttgtacaagtcattttttt 34028521  T
Q  116 -actaatatcatttttatcaagttataaagttttgtgcaagcagtaaaatatgaacaatatcattaaaatataaaatatcaaaatg 200  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  34028520 tactaatatcatttttatgaagttataaagttttgtgcaagcagtaaaatatgaacattatcattcaaatataaaatataaaaatg 34028435  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 20157379 - 20157255
Alignment:
Q  76 ttttactgttctttagcaattttgtacaagtaannnnnnnactaatatcatttttatcaagttataaagttttgtgcaagcagtaaaatatgaacaatat 175  Q
    |||||||||||||||||| |||||| ||||| |       ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  20157379 ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataaagttttgtgcaatcagtaaaatatgaacaatat 20157280  T
Q  176 cattaaaatataaaatatcaaaatg 200  Q
    |||||||||||||||||| ||||||    
T  20157279 cattaaaatataaaatataaaaatg 20157255  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 20157419 - 20157379
Alignment:
Q  16 aaaataaatcttcctgcacacgttatatagttatcacattt 56  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  20157419 aaaaaaaatcttcctgcacacgtaacatagttatcacattt 20157379  T

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Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 30878312 - 30878436
Alignment:
Q  76 ttttactgttctttagcaattttgtacaagtaannnnnnnactaatatcatttttatcaagttataaagttttgtgcaagcagtaaaatatgaacaatat 175  Q
    |||||||||||||||||| |||||| ||||| |       ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30878312 ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataaagttttgtgcaagcagtaaaatatgaacaatat 30878411  T
Q  176 cattaaaatataaaatatcaaaatg 200  Q
    |||||||||||||||||| ||||||    
T  30878412 cattaaaatataaaatataaaaatg 30878436  T

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Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 40097556 - 40097679
Alignment:
Q  76 ttttactgttctttagcaattttgtacaagtaannnnnnnactaatatcatttttatcaagttataaagttttgtgcaagcagtaaaatatgaacaatat 175  Q
    |||||||||||||||||| |||||| ||||| |       ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  40097556 ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataaagttt-gtgcaatcagtaaaatatgaacaatat 40097654  T
Q  176 cattaaaatataaaatatcaaaatg 200  Q
    |||||||||||||||||| ||||||    
T  40097655 cattaaaatataaaatataaaaatg 40097679  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 36786402 - 36786447
Alignment:
Q  26 ttcctgcacacgttatatagttatcacatttcacttaaaaatatta 71  Q
    ||||||||||||||| |||||||| ||||||||||| ||| |||||    
T  36786402 ttcctgcacacgttacatagttattacatttcactttaaagtatta 36786447  T

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