View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14397_high_6 (Length: 355)
Name: NF14397_high_6
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14397_high_6 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0426 (1 HSPs) |
| | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 9774182 - 9773847
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9774182 |
tgctattgtattgtttaataggctgaaaaatcgtcgactaaacaatatgattgaacttacaatattatttagacataaacgatgtttgtcgagtgatacg |
9774083 |
T |
|
| Q |
101 |
cgataatattgattgatagatagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatcccattagttttaatcctct |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
9774082 |
tgataatattgattgatagctagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctactcctggcagttttaatcctct |
9773983 |
T |
|
| Q |
201 |
gtttaactcagttttatttactgcattatagcccgattaggttttcaaaacaaaccattttacaaacccttaacatagaacgataacaattgttgaacgg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9773982 |
gtttaactcagttttatttactgcattatagtccgattaggttttcgaaacaaaccattttacaaacccttaacatagaacgataacaattgttgaatgg |
9773883 |
T |
|
| Q |
301 |
cttacgaatatcgcactagtccttttgaaaacgata |
336 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||| |
|
|
| T |
9773882 |
cttacgaatatcgcactaatccttgtggaaacgata |
9773847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1607656 - 1607734
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| ||||| || |||||||||||| || ||||||||||||||| |
|
|
| T |
1607656 |
tgctattgtatcgtttaatagattgagacatcgtcgattaaacgattcgattgaactcatgaagttatttagacataaa |
1607734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 2268555 - 2268599
Alignment:
| Q |
277 |
agaacgataacaattgttgaacggcttacgaatatcgcactagtcc |
322 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
2268555 |
agaacgataccgattgttgaacggctta-gaatatcgcactagtcc |
2268599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 29336962 - 29337062
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacgcgataatattga |
112 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||| ||| |||| | || ||||||||| || |||| |||||| ||| |||| |||||||| || |
|
|
| T |
29336962 |
gtttaatagatttagaaatcgtcgattaaacaatacgatcgaagtcacaatatcatttagacacgaatgatg-ttgtcgggtgatacgtgataatatcga |
29337060 |
T |
|
| Q |
113 |
tt |
114 |
Q |
| |
|
|| |
|
|
| T |
29337061 |
tt |
29337062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 20383093 - 20383427
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacg |
100 |
Q |
| |
|
||||||||| |||||||||||| || |||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
20383093 |
tgctattgtgttgtttaataggtcgaaaaattgtcgattaaacaatatgattgaactcacgacattatttagacataaacgatgtatgtcgagtgataca |
20383192 |
T |
|
| Q |
101 |
cgataatattgattgatagatagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatcccattagttttaatcctct |
200 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| | |||| |||| |
|
|
| T |
20383193 |
tggtaatattgattgatagctagaatctatatgcttgatcaagataatatatgcaacgtttggttaatgaa--gtctaatcccaacaagtttatctctct |
20383290 |
T |
|
| Q |
201 |
gtttaactcagttttatttactgcattatagcccgattaggtttt-caaaacaaaccattttacaaacccttaacatagaacgataacaattgttgaacg |
299 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||| | ||||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20383291 |
gtttaactcagttttaattaccgcattttagtctgattaggttttagaaaaaaaactattttacaaacccttaacttagaacgataacaattgttgaacg |
20383390 |
T |
|
| Q |
300 |
gcttacgaatatcgcactagtccttttgaaaacgata |
336 |
Q |
| |
|
|||||||||||| ||| ||||| |||||||| |||| |
|
|
| T |
20383391 |
acttacgaatatcacaccagtccctttgaaaaagata |
20383427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 14759484 - 14759808
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacg |
100 |
Q |
| |
|
|||||||| |||||||||||| | ||||||||||| | |||||| || ||||| |||||||||||| ||||||||| ||| ||||| ||||| || ||| |
|
|
| T |
14759484 |
tgctattgcattgtttaatagaccgagaaatcgtcaattaaacattatgattgcactcacgacattttttagacatgaacaatgtt-gtcgaatgatact |
14759582 |
T |
|
| Q |
101 |
cgataatattgattgatagatagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatcccattagttttaatcctct |
200 |
Q |
| |
|
| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| || | |
|
|
| T |
14759583 |
tggtaatattgattgatagtta-------tatgcttgatcaagagaatatatgcgacgtttggttaatgaaat--ctaatcccaacagttttacgtcttt |
14759673 |
T |
|
| Q |
201 |
gtttaactcagttttatttactgcattatagcccgattaggttttcaaaacaaaccattttacaaacccttaacatagaacgataacaattgttgaacgg |
300 |
Q |
| |
|
|||||||| ||||| |||||| |||||||| ||||||||| |||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
14759674 |
gtttaacttagttt-atttacctcattatagtccgattaggatttcgcaacaaacaattttcaaaacccttaactaagaacgataaccattgttgaacgg |
14759772 |
T |
|
| Q |
301 |
cttacgaatatcgcactagtccttttgaaaacgata |
336 |
Q |
| |
|
||||||||||||| |||||||| | || |||||||| |
|
|
| T |
14759773 |
cttacgaatatcgtactagtccctatggaaacgata |
14759808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 9949045 - 9948955
Alignment:
| Q |
4 |
tattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtg |
95 |
Q |
| |
|
||||| || ||||||||| |||||||||||||| ||||| |||| |||||| |||| ||||||||||| ||| || |||| |||||||||| |
|
|
| T |
9949045 |
tattggatcgtttaatagattgagaaatcgtcgattaaacgatacaattgaaatcacaacattatttagtcatgaaggatg-ttgtcgagtg |
9948955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 11015536 - 11015461
Alignment:
| Q |
10 |
attgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgt |
85 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||| || ||||| | ||||||||||||| || ||||| |
|
|
| T |
11015536 |
attgtttaatagattgagaaatcgtcgattaaacgatacgatcgatctcacaatattatttagacatgaatgatgt |
11015461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25541468 - 25541546
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||| || |||| ||||||||||||||| || ||||||| ||||||| |
|
|
| T |
25541468 |
tgctattggatcgtttaatagattgagaaatcgttgataaaacgatacgattgaactcatgaagttatttacacataaa |
25541546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 18750461 - 18750400
Alignment:
| Q |
15 |
ttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacat |
76 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||| ||||| |||| ||||||||||||||| |
|
|
| T |
18750461 |
ttaatagattgagaaatagtcgattaaacgatacggttgaaatcacaacattatttagacat |
18750400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 22870564 - 22870491
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtt |
86 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||| ||| |||| | || |||||||||| || |||||| |
|
|
| T |
22870564 |
gtttaatagattgagaaatcgtcgattaaacgatacgatcgaaatcacaatatcatttagacatgaatgatgtt |
22870491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 13497971 - 13497652
Alignment:
| Q |
4 |
tattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacgcga |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||| |||||||||| |||| |||||||||| || || |
|
|
| T |
13497971 |
tattgtattgtttaataggccgagaaattgtcgactaaacaatacgattgaattcacgatattacttagacataattgatg-ttgtcgagtgaaacatga |
13497873 |
T |
|
| Q |
104 |
ta--atattgattgatagatagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatcccattagttttaatcctctg |
201 |
Q |
| |
|
|| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||| |||| || |||||||||||| |
|
|
| T |
13497872 |
taatatattgatttatagctagaatctatatgcttgattaagagaatatatgcgacattttcttaatgaa--gtctaaccccaacagctttaatcctctg |
13497775 |
T |
|
| Q |
202 |
tttaactcagtttta-tttactgcattatagcccgattaggttttcaaaacaaaccattttacaaacccttaacatagaacgat-aacaattgttgaacg |
299 |
Q |
| |
|
| ||||||| ||||| |||| ||||||||| |||||||||||||| ||||||| |||||||||| ||||||| || |||||| || |||||||||||| |
|
|
| T |
13497774 |
tctaactcaattttattttatcgcattatagtccgattaggttttcgcaacaaacaattttacaaaaccttaacttaaaacgataaaaaattgttgaacg |
13497675 |
T |
|
| Q |
300 |
gcttacgaatatcgcactagtcc |
322 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
13497674 |
gcttacgaatatcgcactagtcc |
13497652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 16428633 - 16428702
Alignment:
| Q |
10 |
attgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
16428633 |
attgtttgataggctgagaaatcgtcgatcaaacaatacgattgagcgcacgacattatttagacataaa |
16428702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 24852924 - 24852997
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtt |
86 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| |||||||||| ||||| | ||||||||||||| || |||||| |
|
|
| T |
24852924 |
gtttaatagattgagaaattgtcgattaaacgatacgattgatctcacaatattatttagacatgaatgatgtt |
24852997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 13031696 - 13031743
Alignment:
| Q |
9 |
tattgtttaataggctgagaaatcgtcgactaaacaatacgattgaac |
56 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
13031696 |
tattggttaataggctgagagatcgtcgattaaacaatacaattgaac |
13031743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 304
Target Start/End: Complemental strand, 28589063 - 28588764
Alignment:
| Q |
4 |
tattgtattgtttaataggctgagaaatcgtcgactaaa-caatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacgcg |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||| | |
|
|
| T |
28589063 |
tattgtattgtttaataggccgagaaatcgtcaattaaaacaatacgattgaactcacgacattattaagatataaacgatgtctgtcgagtgatacgtg |
28588964 |
T |
|
| Q |
103 |
ataatattgattgatagatagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatcccattagttttaatcctctgt |
202 |
Q |
| |
|
|||||||||||||||| ||||||||||| | | || | ||||||||||| |||||||||||| |||| ||||||||||| |||||||| |||||| |
|
|
| T |
28588963 |
gtaatattgattgatagctagaatctatacgtctaattatgagaatatatgtgacgtttggttagtgaa--gtctaatcccagcagttttaagtctctgt |
28588866 |
T |
|
| Q |
203 |
ttaactcagttttatttactgcattatagcccgattagg-ttttcaaaacaaaccattttacaaacccttaacatagaacgataacaattgttgaacggc |
301 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||| ||||| |||||||| |||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
28588865 |
ttaactctagtttatttaccgcattatagtccgattaggtttttcgaaacaaacaattttaaaaaccc-taacttagaacgataacaattgttgaacggc |
28588767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 6640354 - 6640425
Alignment:
| Q |
6 |
ttgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacata |
77 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| ||||||||||||||| || ||||||||||||| |
|
|
| T |
6640354 |
ttgtattgtttaatagattgagacatcgtcgattaaacgatacgattgaactcatgaagttatttagacata |
6640425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 8895248 - 8895311
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacat |
76 |
Q |
| |
|
|||||||||| ||||||||| |||| |||| ||||||||||||||| || |||||||||||| |
|
|
| T |
8895248 |
gtttaataggttgagaaatcatcgattaaatgatacgattgaactcatgaagttatttagacat |
8895311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 52183076 - 52183138
Alignment:
| Q |
24 |
tgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtt |
86 |
Q |
| |
|
|||||||||||| | ||||| |||||||||| ||||| |||| |||||||||| || |||||| |
|
|
| T |
52183076 |
tgagaaatcgtcaattaaacgatacgattgatctcacaacatcatttagacatgaatgatgtt |
52183138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 8847874 - 8847828
Alignment:
| Q |
276 |
tagaacgataacaattgttgaacggcttacgaatatcgcactagtcctt |
324 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
8847874 |
tagaacgataacgattgttgaacggctt--gaatatcgcgctagtcctt |
8847828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 17346572 - 17346319
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacg |
100 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||| |||| | |||||||| ||| |
|
|
| T |
17346572 |
tgctattgtattgcttaataggttgagaaatcgtcgattaagcaatacgatcgaacccacgacattatttagacataaatgatgctcgtcgagtgataca |
17346473 |
T |
|
| Q |
101 |
cgataatattgattgatagatagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatcccattagttttaatcctct |
200 |
Q |
| |
|
|||||||| || | ||| ||| |||||||| |||| ||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
17346472 |
tgataatatcgaataataactagtgtctatatgattgaccaagagaatatgtgcgaggtttgcttaatgaa--gtctaatcccagcagttttatatctct |
17346375 |
T |
|
| Q |
201 |
gtttaactcagttttatttactgcattatagcccgatta-ggttttcaaaacaaac |
255 |
Q |
| |
|
||||||||| | ||| |||| ||||||||| |||||| ||||| |||||||||| |
|
|
| T |
17346374 |
gtttaactctatcttaattaccgcattatagttcgattatggtttacaaaacaaac |
17346319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 40153687 - 40153555
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacg |
100 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| || ||| ||||| ||| |||| || |||| |||||||||||| ||||| || ||||| |||| |
|
|
| T |
40153687 |
tgctattgtattgattaataggctgaaaaatcgttgattaagcaatatgatcgaaccaacatcattgtttagacataaatgatgtgcgttgagtgatacg |
40153588 |
T |
|
| Q |
101 |
cgataatattgattgatagatagaatctatatg |
133 |
Q |
| |
|
| |||||||||||| ||| ||||||||||||| |
|
|
| T |
40153587 |
caataatattgattaataactagaatctatatg |
40153555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 37335472 - 37335372
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacgcgataatattga |
112 |
Q |
| |
|
||||||||| ||||||||||| || ||||| ||||||| ||| |||||||||| |||||||||||||| || |||||||||| || | |||||||| || |
|
|
| T |
37335472 |
gtttaatagattgagaaatcgttgattaaacgatacgatcgaagtcacgacattgtttagacataaacggtg-ttgtcgagtgatatgtgataatatcga |
37335374 |
T |
|
| Q |
113 |
tt |
114 |
Q |
| |
|
|| |
|
|
| T |
37335373 |
tt |
37335372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 34738475 - 34738398
Alignment:
| Q |
2 |
gctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
||||||| || ||||||||| |||||||||||||| ||||| |||||||||| ||||| | || ||||||||||||| |
|
|
| T |
34738475 |
gctattggatcgtttaatagattgagaaatcgtcgattaaacgatacgattgatctcacaatatcatttagacataaa |
34738398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 14515236 - 14515320
Alignment:
| Q |
9 |
tattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgag |
93 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||| | ||| ||| || ||||| |||||||| |||||||||| |||||| |||| |
|
|
| T |
14515236 |
tattggttaataggctcagaaatcgtcgattaaccgatatgatcgacctcacaacattattcagacataaacattgtttgccgag |
14515320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 7 - 336
Target Start/End: Original strand, 23430951 - 23431275
Alignment:
| Q |
7 |
tgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacgcgataa |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||||| | ||||||||| ||||||| |||||||||| |||| ||||||| || |||| | ||| |
|
|
| T |
23430951 |
tgtattgtttaataggttgagaaatcgtcaattaaacaatatgtttgaactcaaaacattatgtagacataaatgatg-ttgtcgaatgatacgtggtaa |
23431049 |
T |
|
| Q |
107 |
tattgattgatagatagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatcccattagttttaatcctctgtttaa |
206 |
Q |
| |
|
||| || ||||| ||||||||||||| ||||||| || |||||||||||||||||| |||||| ||||||||||| || ||||| |||||| || |
|
|
| T |
23431050 |
tatcgagcgatagctagaatctatatgtttgatcatgaagatatatgcgacgtttggtcaatgaa--gtctaatcccagtatttttatgtctctgtccaa |
23431147 |
T |
|
| Q |
207 |
-ctcagttttatttactgcattatagcccgattaggttttcaaaacaaaccattttacaaacccttaacatagaacgataacaattgttgaacggcttac |
305 |
Q |
| |
|
||| ||||||||||| |||| |||| | | || ||||||| |||||| || ||| ||||||||||| ||||| ||||| ||||||||| |||||| |
|
|
| T |
23431148 |
tctc-gttttatttaccgcataatagttcaaata-gttttcataacaaagaatcttataaacccttaacttagaatgataatcattgttgaatggctta- |
23431244 |
T |
|
| Q |
306 |
gaatatcgcactagtccttttgaaaacgata |
336 |
Q |
| |
|
|||||||||||||||| | || |||||||| |
|
|
| T |
23431245 |
taatatcgcactagtccatgtggaaacgata |
23431275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 23391434 - 23391710
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||| |
|
|
| T |
23391434 |
tgctattgtattgtttaataggctgagaaatcatcgattaaacaatatgattgaactcacgacattatttagacataaatgatg--tgtcgag---tacg |
23391528 |
T |
|
| Q |
101 |
cgataatattgattgatagatagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatcccattagttttaatcctct |
200 |
Q |
| |
|
| |||| | || |||||| || ||||| |||| ||||| | | ||||||| |||||||| | ||| || ||||||||||| ||||||| | |||| |
|
|
| T |
23391529 |
tggtaatttcgagtgatagcta-aatctgtatgtttgataataaagatatatgtgacgtttgatcaataaa--gtctaatcccaacagttttacttctct |
23391625 |
T |
|
| Q |
201 |
gtttaa-ctcagttttatttactgcattatagcccgattaggttttcaaaacaaaccattttacaaacccttaacatagaacgataa |
286 |
Q |
| |
|
|| ||| ||| ||||||||||| ||||||||| | | || ||||||| |||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
23391626 |
gtctaatctc-gttttatttaccgcattatagttcaaata-gttttcataacaaataattttataaacccttaacatagaatgataa |
23391710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 17404912 - 17404834
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||| | ||||| ||||||||||||||| || |||||||||||||||| |
|
|
| T |
17404912 |
tgctattgaatcgtttaatagattgagaaatcgtttattaaacgatacgattgaactcatgaaattatttagacataaa |
17404834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 31095625 - 31095691
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
||||||||| ||| |||||||||| |||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
31095625 |
gtttaatagattgaaaaatcgtcgattaaacagtacgatcgaaatcacgacattatttagacataaa |
31095691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 17735668 - 17735602
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||| | ||| | || ||||||||||||| |
|
|
| T |
17735668 |
gtttaatagattgagaaatcgtcgattaaacgatacgattgatcgcacaatatcatttagacataaa |
17735602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 19036937 - 19036871
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||| | ||| | || ||||||||||||| |
|
|
| T |
19036937 |
gtttaatagattgagaaatcgtcgattaaacgatacgattgatcgcacaatatcatttagacataaa |
19036871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 461339 - 461400
Alignment:
| Q |
25 |
gagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtt |
86 |
Q |
| |
|
||||||||||||| ||||| |||||||||| ||||| | || |||||||||| || |||||| |
|
|
| T |
461339 |
gagaaatcgtcgattaaacgatacgattgatctcacaatatcatttagacatgaatgatgtt |
461400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 2785016 - 2784864
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||| |||| || |||||||||||||||||||| |||| ||||| |||||| ||| |||| ||| |
|
|
| T |
2785016 |
tgctattgtattgtttaataggccaagaaattgtcgattaaa---tatgattgaactcacgacattatatagatataaatgatgtt-gtcaagtgatact |
2784921 |
T |
|
| Q |
101 |
cgataatattgattgatagatagaatctatatgcttgatcaagagaatatatgcgac |
157 |
Q |
| |
|
| |||||| |||||||| |||| |||||||||||||||| |||||||||||||| |
|
|
| T |
2784920 |
tggtaatatggattgataactagagtctatatgcttgatcataagaatatatgcgac |
2784864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 304
Target Start/End: Complemental strand, 2769234 - 2769127
Alignment:
| Q |
197 |
ctctgtttaactcagttttatttactgcattatagcccgattaggttttcaaaacaaaccattttacaaacccttaacatagaacgataacaattgttga |
296 |
Q |
| |
|
|||||||||||| |||||||||| ||||| | | ||||||| ||| || ||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2769234 |
ctctgtttaactttattttatttaccgcatttttgtccgattaagttctcgcaacaaacaattttacaaacccttaacttagaacgataacaattgttga |
2769135 |
T |
|
| Q |
297 |
acggctta |
304 |
Q |
| |
|
|||||||| |
|
|
| T |
2769134 |
acggctta |
2769127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 43102428 - 43102361
Alignment:
| Q |
9 |
tattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacat |
76 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| |||||||||||||| ||| | |||||||||||| |
|
|
| T |
43102428 |
tattggttaataggctgagaaatcgtcgattaaccaatacgattgaacccacaagcttatttagacat |
43102361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 7063555 - 7063648
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtg |
95 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||||| ||||| |||| |||||| ||| || ||||||||||||| || |||| |||||||||| |
|
|
| T |
7063555 |
tgctattggatcgtttaatagattgagaaatcgtcgattaaacgatacaattgaaatcatgatattatttagacatgaatgatg-ttgtcgagtg |
7063648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 13249042 - 13248942
Alignment:
| Q |
13 |
gtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgagtgttacgcgataatattga |
112 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||| |||| || |||||||||| || |||| |||||| ||| ||| ||||||||||| |
|
|
| T |
13249042 |
gtttaatagattgagaaatcgtcgattaaacgatacgattgaaatcacattatcatttagacatgaatgatg-ttgtcgggtgatacatgataatattga |
13248944 |
T |
|
| Q |
113 |
tt |
114 |
Q |
| |
|
|| |
|
|
| T |
13248943 |
tt |
13248942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39456658 - 39456736
Alignment:
| Q |
1 |
tgctattgtattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
|||||||| || ||||||||| ||||||| |||||| || || ||| ||||||||||| || ||||||||||||||| |
|
|
| T |
39456658 |
tgctattggatcgtttaatagattgagaaaacgtcgattagacgatatgattgaactcatgaagttatttagacataaa |
39456736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 45620344 - 45620388
Alignment:
| Q |
270 |
ttaacatagaacgataacaattgttgaacggcttacgaatatcgca |
315 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
45620344 |
ttaacttagaacgatatcaattgttgaacggctta-gaatatcgca |
45620388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 6847880 - 6847808
Alignment:
| Q |
14 |
tttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtt |
86 |
Q |
| |
|
|||||||| ||||||||| |||| ||||| |||||||| | ||||| | ||||||||||||| || |||||| |
|
|
| T |
6847880 |
tttaatagattgagaaatcatcgattaaacgatacgattaatctcacaatattatttagacatgaatgatgtt |
6847808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 239497 - 239567
Alignment:
| Q |
9 |
tattgtttaataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaa |
79 |
Q |
| |
|
||||| |||||||||| ||||||||| || ||| ||||||||| |||| ||| || ||||||||||||||| |
|
|
| T |
239497 |
tattgattaataggctaagaaatcgttgattaatcaatacgatcgaacccacaacgttatttagacataaa |
239567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0426 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0426
Description:
Target: scaffold0426; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 2343 - 2404
Alignment:
| Q |
121 |
tagaatctatatgcttgatcaagagaatatatgcgacgtttggttaatgaattgtctaatccca |
184 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| ||||| | |||| ||||||||||| |
|
|
| T |
2343 |
tagaatctatatgcatgatcatgagaatatatgcgacgattggtcagtgaa--gtctaatccca |
2404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 320
Target Start/End: Complemental strand, 5711 - 5599
Alignment:
| Q |
205 |
aactcagttttatttactgcattatagcccgattaggttttcaaaacaaaccattttacaaacccttaacatagaacgataacaattgttgaacggctta |
304 |
Q |
| |
|
|||||| ||||||||| | || ||||| | ||||||||||| |||||||| | || | |||||| | || || ||||||| |||||||||||||||||| |
|
|
| T |
5711 |
aactcaattttatttatttcactatagttctattaggttttctaaacaaacaaatt-ataaacccatcacttaaaacgatatcaattgttgaacggctta |
5613 |
T |
|
| Q |
305 |
cgaatatcgcactagt |
320 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5612 |
--aatatcgcactagt |
5599 |
T |
|
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Target: scaffold0059; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 5896 - 5819
Alignment:
| Q |
16 |
taataggctgagaaatcgtcgactaaacaatacgattgaactcacgacattatttagacataaacgatgtttgtcgag |
93 |
Q |
| |
|
||||||||| ||||||||| || ||| ||||| || |||| |||||| ||||||||||||||| | |||||||||| |
|
|
| T |
5896 |
taataggctaagaaatcgttgattaatcaatatgaccgaacccacgactttatttagacataaataacgtttgtcgag |
5819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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