View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14397_low_1 (Length: 693)
Name: NF14397_low_1
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14397_low_1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 393 - 693
Target Start/End: Original strand, 15466918 - 15467218
Alignment:
| Q |
393 |
agtcaataaaagttgatgcccaaatacattaattttagttgattcaactattttacgcgagtgaatattttagtcatgtataggaaatgaataataaaat |
492 |
Q |
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| T |
15466918 |
agtccataaaagttgatgcccaaatacattaattttagttgattcaactattttacgcgagcgaatattttagtcatgtataggaaatgaataataaaat |
15467017 |
T |
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| Q |
493 |
gctaagaatttgtacctctccttctaaagcttcaaatgtattgacaaacatccaatcagcttgatccaaatttgagaattgactcaatttcattgccata |
592 |
Q |
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| T |
15467018 |
gctaagaatttgtacctctccttctaaagcttcaaatgtattgacaaacatccaatcagcttgatccaaatttgagaattgactcaatttcattgccata |
15467117 |
T |
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| Q |
593 |
taagcagggtaactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagatcaggtacaaccaaaggcaattcatcaacaggaa |
692 |
Q |
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| T |
15467118 |
taagcagggtaactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagatcaggtacaaccaaaggcaattcatcaacaggaa |
15467217 |
T |
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| Q |
693 |
t |
693 |
Q |
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| T |
15467218 |
t |
15467218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 484 - 691
Target Start/End: Original strand, 15474560 - 15474767
Alignment:
| Q |
484 |
taataaaatgctaagaatttgtacctctccttctaaagcttcaaatgtattgacaaacatccaatcagcttgatccaaatttgagaattgactcaatttc |
583 |
Q |
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| T |
15474560 |
taataaaatgctaagaatttgtacctctgcttctaaagcttcaaatgtattgacaaacatccaatcagcttgatttaaattagagaattgattcaacttc |
15474659 |
T |
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| Q |
584 |
attgccatataagcagggtaactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagatcaggtacaaccaaaggcaattcat |
683 |
Q |
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| T |
15474660 |
atagccatataagcaggataactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagaccaggtacaatcaaaggcaattcat |
15474759 |
T |
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| Q |
684 |
caacagga |
691 |
Q |
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| T |
15474760 |
ctacagga |
15474767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 15466749 - 15466851
Alignment:
| Q |
224 |
cgttctgtttttaaacacatttcacttttttggtaaaatacatttgactttacttttgtatattcgtaagactaagtaataaatagtcatgaatattgtg |
323 |
Q |
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| T |
15466749 |
cgttctgtttttaaacacatttcacttttttggtaaaatacatttgactttacttttgtatatacgtaagactaagtaataaatagtcatgaatattgtg |
15466848 |
T |
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| Q |
324 |
gag |
326 |
Q |
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| T |
15466849 |
gag |
15466851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 15466590 - 15466650
Alignment:
| Q |
66 |
ggaacaagaaaacaatagttgactattattttctcttcttttataagtgtccttttttgtc |
126 |
Q |
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| T |
15466590 |
ggaacaagaaaacaatagttgactattattttctcttcttttataagtgtccttttttgtc |
15466650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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