View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14397_low_2 (Length: 604)

Name: NF14397_low_2
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14397_low_2
NF14397_low_2
[»] chr1 (2 HSPs)
chr1 (212-582)||(44766368-44766747)
chr1 (14-193)||(44766786-44766965)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 212 - 582
Target Start/End: Complemental strand, 44766747 - 44766368
Alignment:
Q  212 catattatagaattttagttttatggagaaaataagtcttgttagaagnnnnnnnnnnnnnnnnnncattgatcaatatcgtatgcaagtaatacgcttt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||| |||||||||    
T  44766747 catattatagaattttagttttatggagaaaataagtcttgttagaagtttttttttatttttt--cattgatcaatatcgtatgcaagtcatacgcttt 44766650  T
Q  312 ttcacttaatcaataagtctttgttattataaatgaattaaagtgtgaaatgaaatcattaggatgtaatgtcttcaattttttggtgaagtaaacatct 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44766649 ttcacttaatcaataagtctttgttattataaatgaattaaagtgtgaaatgaaatcattaggatgtaatgtcttcaattttttggtgaagtaaacatct 44766550  T
Q  412 acattcacaagtcgttgctaaagaaacataaagcttttctttgtatggt-----------aactaattttacaaatagccaagccacttacattttcaaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  44766549 acattcacaagtcgttgctaaagaaacataaagcttttctttgtatggtacatacaataaaactaattttacaaatagccaagccacttacattttcaaa 44766450  T
Q  501 gggggttacaataacccgtagaattgagcaacaatccttgtttgtttagccaaacctactttaaactttgtctcccttacac 582  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44766449 gggggttacaataatccgtagaattgagcaacaatccttgtttgtttagccaaacctactttaaactttgtctcccttacac 44766368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 44766965 - 44766786
Alignment:
Q  14 gtaaattattatttaattggaatttctcatcttatttggggaatatttttaaagtggggagagaagagtggggagtgcccatgattaatatattttggtt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  44766965 gtaaattattatttaattggaatttctcatcttatttggggaatatttttaaagtggggagagaagagtgaggagtgcccatgattaatatgttttggtt 44766866  T
Q  114 ttaagagtaatctaaagacaaacataattatttgtaaagaaaaatgatttgaagaatttgaaaaagtcttgcagatttat 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44766865 ttaagagtaatctaaagacaaacataattatttgtaaagaaaaatgatttgaagaagttgaaaaagtcttgcagatttat 44766786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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