View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14397_low_3 (Length: 577)
Name: NF14397_low_3
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14397_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 55050988 - 55050633
Alignment:
| Q |
18 |
aaatctcgtccgaagagagaacagatgatcgaacgaatcaaagataaggttgaagttcccaggtctactccttggcctcttcctttcaagctcatttgat |
117 |
Q |
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| T |
55050988 |
aaatctcgtccgaagagagaacagatgatagaacgaatcaaagataaggttgaagttcccaggtctactccttggcctcttcctttcaagctcatttgat |
55050889 |
T |
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| Q |
118 |
ttcattccatttgcctccaattgtactattccaatttttagggttttgtctatccatgcatgtactttcaatgccattttctagttcaattgaaatttta |
217 |
Q |
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| T |
55050888 |
ttcattccatttgcctccaattgtactattccaatttttagggttttgtctatccatgcatgtactttcaatgccattttctagttcaattgaaatttta |
55050789 |
T |
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| Q |
218 |
attttaat---tt--tgatacg----gtactgctacctgtttactttactccagttctttataatttgatcagtttatttataataatattttggaatga |
308 |
Q |
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| T |
55050788 |
attttgatacgttactgctaagctgagtaccgctacctgtttactttactccagttctttttaatttgatcagtttatttataataatattttgtaatga |
55050689 |
T |
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| Q |
309 |
attactcgtccattgtattttttgtgttttactgtataaacctgaaattctaccttga |
366 |
Q |
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| T |
55050688 |
attactcgtcaattgtattttt--tgttttactgtataaacctgaaattctaccttga |
55050633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 407 - 563
Target Start/End: Complemental strand, 55050596 - 55050440
Alignment:
| Q |
407 |
ttgtgagggcaagctatcaaatgctgcctgccacacacgcatgggtgttttgtggtaaaatgtgattcacgcttttgttcgaccttatgatagataggaa |
506 |
Q |
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| T |
55050596 |
ttgtgagggcaagctatcaaatgctgcctgccacacacgcatgggtgttttgtggtaaaatgtgattcacgcttttgttcgaccttatgatagattggaa |
55050497 |
T |
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| Q |
507 |
aacaacattcatattgtgttgttgaattgaaggttcagattcgtaccccaacctttg |
563 |
Q |
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| T |
55050496 |
aacaacattcatattgtgttgttgaattgaaggttcagattggtaccccaacctttg |
55050440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 28389169 - 28388980
Alignment:
| Q |
29 |
gaagagagaacagatgatcgaacgaatcaaagataaggttgaagttcccaggtctactccttggcctcttcctttcaagctcatttgatttcattcc-at |
127 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || || |
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| T |
28389169 |
gaagagagaacatatgatcaaacgaatcaaagataaggttgaagttcccagatctactccttggcctcttcttttcaagctcatttgatttcatacctat |
28389070 |
T |
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| Q |
128 |
ttgcctccaattgtactattccaatttttagggttttgtc-tatccatgcatgtactttcaatgccattttctagttcaattgaaatttt |
216 |
Q |
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||| || ||||| ||||||||| |||||||||||||| || || | || |||||||||||| ||||||||| || |||||| |||||||| |
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| T |
28389069 |
ttgtcttcaattctactattcccatttttagggttttttcataacgatacatgtactttcattgccattttatatttcaatagaaatttt |
28388980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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