View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14397_low_4 (Length: 491)

Name: NF14397_low_4
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14397_low_4
NF14397_low_4
[»] chr1 (15 HSPs)
chr1 (19-472)||(1927882-1928335)
chr1 (24-201)||(29208913-29209090)
chr1 (19-192)||(36402400-36402573)
chr1 (19-193)||(10896953-10897127)
chr1 (19-201)||(33243063-33243241)
chr1 (19-201)||(33263236-33263414)
chr1 (19-201)||(45318613-45318795)
chr1 (19-201)||(26882575-26882757)
chr1 (19-201)||(52705546-52705728)
chr1 (79-167)||(9831779-9831867)
chr1 (83-171)||(45535001-45535089)
chr1 (19-77)||(9831443-9831501)
chr1 (24-128)||(42657873-42657976)
chr1 (24-128)||(19007402-19007506)
chr1 (24-128)||(48194748-48194852)
[»] chr6 (11 HSPs)
chr6 (24-472)||(30878010-30878436)
chr6 (19-201)||(6476462-6476644)
chr6 (19-193)||(10643769-10643945)
chr6 (19-171)||(29834064-29834216)
chr6 (19-171)||(29865498-29865650)
chr6 (24-126)||(7858198-7858300)
chr6 (25-193)||(3110042-3110210)
chr6 (54-128)||(709102-709176)
chr6 (24-128)||(5957287-5957391)
chr6 (24-128)||(7100322-7100426)
chr6 (24-128)||(8794204-8794308)
[»] chr2 (13 HSPs)
chr2 (16-472)||(20157255-20157691)
chr2 (19-201)||(34028681-34028863)
chr2 (16-199)||(24193237-24193420)
chr2 (26-193)||(11534995-11535162)
chr2 (24-199)||(11998169-11998343)
chr2 (19-201)||(6289250-6289432)
chr2 (19-201)||(29941098-29941280)
chr2 (293-472)||(34028435-34028615)
chr2 (16-201)||(45547081-45547266)
chr2 (24-185)||(24193707-24193875)
chr2 (58-138)||(45485543-45485623)
chr2 (24-128)||(18176291-18176395)
chr2 (24-128)||(7487952-7488056)
[»] chr7 (13 HSPs)
chr7 (16-472)||(40097244-40097679)
chr7 (19-201)||(30110956-30111138)
chr7 (19-201)||(43057430-43057612)
chr7 (19-193)||(152011-152185)
chr7 (19-201)||(27418391-27418573)
chr7 (24-201)||(35089855-35090032)
chr7 (19-201)||(39301005-39301176)
chr7 (19-121)||(47914886-47914988)
chr7 (130-201)||(47914078-47914149)
chr7 (24-128)||(42678015-42678119)
chr7 (24-128)||(46037172-46037276)
chr7 (45-130)||(34115293-34115378)
chr7 (24-96)||(31494397-31494469)
[»] chr4 (19 HSPs)
chr4 (24-201)||(26336226-26336403)
chr4 (24-201)||(45332824-45333001)
chr4 (24-201)||(45340514-45340691)
chr4 (24-201)||(42720877-42721055)
chr4 (16-199)||(47685294-47685477)
chr4 (19-193)||(54509867-54510039)
chr4 (19-185)||(8880597-8880763)
chr4 (16-201)||(8583754-8583939)
chr4 (24-185)||(33449944-33450105)
chr4 (16-201)||(44930025-44930210)
chr4 (19-201)||(42218195-42218377)
chr4 (24-201)||(52109564-52109741)
chr4 (16-176)||(3435731-3435891)
chr4 (20-201)||(25935941-25936123)
chr4 (24-201)||(40143934-40144095)
chr4 (112-193)||(7820292-7820373)
chr4 (46-92)||(7820242-7820288)
chr4 (25-128)||(28100404-28100507)
chr4 (24-128)||(38230930-38231034)
[»] chr8 (24 HSPs)
chr8 (19-193)||(37567129-37567303)
chr8 (24-201)||(4302555-4302734)
chr8 (19-192)||(30382432-30382605)
chr8 (19-201)||(43605113-43605295)
chr8 (19-185)||(10802536-10802702)
chr8 (19-201)||(41386619-41386801)
chr8 (16-201)||(4655197-4655382)
chr8 (24-185)||(8502790-8502951)
chr8 (19-201)||(7148193-7148375)
chr8 (19-201)||(29260025-29260207)
chr8 (19-185)||(40265046-40265212)
chr8 (24-201)||(42275130-42275308)
chr8 (19-201)||(2112944-2113126)
chr8 (16-201)||(28619994-28620179)
chr8 (19-171)||(9457696-9457848)
chr8 (19-201)||(41965549-41965729)
chr8 (24-185)||(35142200-35142361)
chr8 (19-155)||(9209189-9209325)
chr8 (95-185)||(40013264-40013350)
chr8 (144-201)||(41965347-41965404)
chr8 (16-64)||(40013358-40013406)
chr8 (19-61)||(1605902-1605944)
chr8 (60-128)||(39038945-39039013)
chr8 (24-128)||(43489064-43489168)
[»] chr3 (22 HSPs)
chr3 (16-193)||(27593302-27593479)
chr3 (19-201)||(36054756-36054938)
chr3 (19-282)||(36786124-36786385)
chr3 (19-177)||(39338072-39338228)
chr3 (19-201)||(24150581-24150763)
chr3 (19-201)||(35731085-35731267)
chr3 (37-201)||(26005604-26005768)
chr3 (24-201)||(38629549-38629726)
chr3 (19-192)||(46251961-46252134)
chr3 (19-201)||(13662701-13662883)
chr3 (16-178)||(30588989-30589151)
chr3 (19-191)||(50900206-50900378)
chr3 (19-198)||(52023955-52024130)
chr3 (25-201)||(26293316-26293492)
chr3 (19-163)||(26005770-26005914)
chr3 (25-166)||(38682585-38682728)
chr3 (19-201)||(19551907-19552079)
chr3 (105-192)||(26556036-26556123)
chr3 (19-96)||(26555967-26556044)
chr3 (298-343)||(36786402-36786447)
chr3 (24-128)||(85909-86013)
chr3 (24-128)||(23697165-23697269)
[»] chr5 (8 HSPs)
chr5 (19-193)||(6828548-6828723)
chr5 (24-199)||(40410748-40410923)
chr5 (24-185)||(17518587-17518748)
chr5 (24-185)||(10571269-10571430)
chr5 (54-128)||(2276027-2276101)
chr5 (25-71)||(26876311-26876357)
chr5 (24-96)||(6902525-6902597)
chr5 (24-128)||(28594263-28594367)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-201)||(81531-81713)
[»] scaffold0153 (1 HSPs)
scaffold0153 (19-201)||(34563-34745)
[»] scaffold0237 (1 HSPs)
scaffold0237 (19-171)||(21192-21344)
[»] scaffold0202 (1 HSPs)
scaffold0202 (19-199)||(16309-16473)
[»] scaffold0472 (1 HSPs)
scaffold0472 (24-128)||(1707-1811)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 1928335 - 1927882
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
1928335 cagtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 1928236  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgagannnnnnnnaattgcttc 218  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||        | |||||||    
1928235 agactttttagtgtaaaatgcatctactaacaatctcacacctagccttgtgacttttttgtctcccacacatagtcttgagattttttttagttgcttc 1928136  T
219 tcgttattttcnnnnnnnacagtagttgcttctcgagtctcgacgttgctgttcacattccagtccnnnnnnntaaatcttcctgcacacgttatatagt 318  Q
    |||||||||||       |  ||||||||||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||| |||||    
1928135 tcgttattttc-ttttttatggtagttgcttctcgagtctcgacgttgctgttcacgttccagtcccaaaaaaaaaatcttcctgcacacgttacatagt 1928037  T
319 tatcacatttcacttaaaaatattatagattttactgttctttagcaattttgtacaagt-aannnnnnnactaatatcatttttatcaagttataaagt 417  Q
    ||||||||||||||| ||| | ||| ||||||||||||||||||||| |||||| ||||| |        ||||||||||||||||| ||||||||||||    
1928036 tatcacatttcactttaaagttttacagattttactgttctttagcagttttgtgcaagtcattttttttactaatatcatttttatgaagttataaagt 1927937  T
418 tttgtgcaagcagtaaaatatgaacaatatcattaaaatataaaatatcaaaatg 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
1927936 tttgtgcaagcagtaaaatatgaacaatatcattaaaatataaaatataaaaatg 1927882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 29208913 - 29209090
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
29208913 gtattcaattgagattttacacaacttaaaaattgtctattggtattcaaagttctaaggattttaatggattgttgtgagtaatggattttgtgagact 29209012  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||||| ||||| ||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
29209013 ttttagtgtaacatatatctaccaacaatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 29209090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 36402400 - 36402573
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
36402400 cagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtg 36402499  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacata 192  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
36402500 agactttttagtgtaaaatgtacctactaacaatctcacatctaaccttgagacttttttgtctcccacacata 36402573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 10896953 - 10897127
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||    
10896953 cagtggtattcaattgagattttgcccaacttaaaaattgtctattggtattcaaaattggtaggattttaatggattgttatgagtaatggattttgtg 10897052  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatag 193  Q
    | || ||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||| | |||||||    
10897053 aaacattttaatgtaaaatgtacctactaacaatctcacacctaaccttgacacttttttgtctctcacacatag 10897127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 33243241 - 33243063
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
33243241 cagtggtattcaattgagattttgtacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtg 33243142  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    | ||||||||||||||| || | |||||||||||||||||||||     |||||||||||||||||| ||||||| |||||||    
33243141 aaactttttaatgtaaattgtacctactaacaatctcacaccta----agagacttttttgtctcccacacatagccttgaga 33243063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 33263414 - 33263236
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
33263414 cagtggtattcaattgagattttgtacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtg 33263315  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    | ||||||||||||||| || | |||||||||||||||||||||     |||||||||||||||||| ||||||| |||||||    
33263314 aaactttttaatgtaaattgtacctactaacaatctcacaccta----agagacttttttgtctcccacacatagccttgaga 33263236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 45318613 - 45318795
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
45318613 cagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 45318712  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||| ||||||||||||||| || ||| ||||||| |||||||    
45318713 agattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgagacttttttatcacccacacatagccttgaga 45318795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 26882757 - 26882575
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| ||||  ||||||||||||||||| ||||||||||||||||||    
26882757 cagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacagattttaatggattgttgtgagtaatggattttgtg 26882658  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| || |||||||||||||||||||||||||||||||||| | || ||| ||||||| |||||||    
26882657 agattgtttagtgtaaaatgtatatactaacaatctcacacctagccttgagacttttctatcacccacacatagccttgaga 26882575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 52705546 - 52705728
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
52705546 cagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 52705645  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||  ||||||||| |  ||||||||||||||| ||||||||| |||||||| | |||||| ||||||| |||||||    
52705646 agattgtttggtgtaaaatgtacttactaacaatctcacgcctagccttaagacttttctatctcccacacatagccttgaga 52705728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 79 - 167
Target Start/End: Original strand, 9831779 - 9831867
Alignment:
79 taaggattttaatggattgttatgagtaatggattttgtgagactttttaatgtaaaatgcatctactaacaatctcacacctagcctt 167  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |  |||||||||||||||||||| ||||    
9831779 taaggattttaatggattgttgtgagtaatggattttgtgagactttttagtgtaaaatatacttactaacaatctcacacctaacctt 9831867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 45535001 - 45535089
Alignment:
83 gattttaatggattgttatgagtaatggattttgtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgaga 171  Q
    ||||||||||||||||| ||||||||||||||| ||||| | || | ||||||||| | |||||||||||||||||| |||||||||||    
45535001 gattttaatggattgttgtgagtaatggattttttgagattgttgagtgtaaaatgtacctactaacaatctcacacgtagccttgaga 45535089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9831443 - 9831501
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaatt 77  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||    
9831443 cagtggtattcaattgagattttgcacaacttacaaattgtctattggtattcaaaatt 9831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 42657873 - 42657976
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    ||||||||||  |||||| ||||||||| ||| |||| ||| |||||||||| |||||| ||||| ||||||| || |  | |||||||||| |||||||    
42657873 gtattcaattaggatttttcacaacttataaaatgtccattggtattcaaaaatctaag-attttgatggattcttctatggaatggattttatgagact 42657971  T
124 tttta 128  Q
    |||||    
42657972 tttta 42657976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 19007506 - 19007402
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||  ||  |||||  ||||||||||| ||||| |||| ||||  |||||| ||||||| ||    | ||||||||||||||||||    
19007506 gtattcaattgagatttctcatgacttatgaattgtctattggtattaaaaagtctatagattttgatggattcttggatggaatggattttgtgagact 19007407  T
124 tttta 128  Q
    |||||    
19007406 tttta 19007402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 48194748 - 48194852
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||  ||  |||||  ||||||| ||| |||||||||| ||||  |||||| ||||||| ||    | ||||||||||||||||||    
48194748 gtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagact 48194847  T
124 tttta 128  Q
    |||||    
48194848 tttta 48194852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 24 - 472
Target Start/End: Original strand, 30878010 - 30878436
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30878010 gtattcaattcagattttgtacagcttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 30878109  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgagannnnnnnnaattgcttctcgtt 223  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||        | ||||||||||||    
30878110 ttttagtgtaaaatgcatctactaacaatctcacatctagccttgagacttttttgtctcccacacatagtcttgaga-tttttttagttgcttctcgtt 30878208  T
224 attttcnnnnnnnacagtagttgcttctcgagtctcgacgttgctgttcacattccagtccnnnnnnntaaatcttcctgcacacgttatatagttatca 323  Q
    ||||||       || ||||||||||||||||||||||||||||||||||| |||||||||        ||||||| ||||||| || | ||||||||||    
30878209 attttc-ttttttacggtagttgcttctcgagtctcgacgttgctgttcacgttccagtcccaaaaaaaaaatctt-ctgcacaggtaacatagttatca 30878306  T
324 catttcacttaaaaatattatagattttactgttctttagcaattttgtacaagtaannnnnnnactaatatcatttttatcaagttataaagttttgtg 423  Q
    |||||                   |||||||||||||||||| |||||| ||||| |       ||||||||||||||||| ||||||||||||||||||    
30878307 cattt-------------------ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataaagttttgtg 30878387  T
424 caagcagtaaaatatgaacaatatcattaaaatataaaatatcaaaatg 472  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
30878388 caagcagtaaaatatgaacaatatcattaaaatataaaatataaaaatg 30878436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 6476644 - 6476462
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
6476644 cagtggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 6476545  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||    
6476544 agattgtttagtgtaaaatgtaactactaacaatctcacacctagccttgagacttttctgtctcccacacatagccttgaga 6476462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 10643945 - 10643769
Alignment:
19 cagtagtattcaattcagattttg--cacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttg 116  Q
    |||| |||||||||| ||||||||  |||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
10643945 cagtggtattcaattgagattttgatcacaacttaaaaattgtctattggtaatcaaaattgtaaggattttaatggattgttgtgagtaatggattttg 10643846  T
117 tgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatag 193  Q
    |||||||||||| ||||||||| | |||||||||||||||||||||  ||| ||||||||||||||||| |||||||    
10643845 tgagactttttagtgtaaaatgtacctactaacaatctcacacctaatcttaagacttttttgtctcccacacatag 10643769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 29834216 - 29834064
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||  |||||||||| |||| |||||||||||||||||| ||||||||||||||| ||    
29834216 cagtggtattcaattgagattttgcataacttaaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatg 29834117  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgaga 171  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||| ||||||||    
29834116 agattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgaga 29834064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 29865650 - 29865498
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||  |||||||||| |||| |||||||||||||||||| ||||||||||||||| ||    
29865650 cagtggtattcaattgagattttgcataacttaaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatg 29865551  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgaga 171  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||| ||||||||    
29865550 agattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgaga 29865498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 7858300 - 7858198
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||| |||||||| ||||||||||||||    
7858300 gtattcaattgagattttgcacaacttaaaaattgtctattgatattcaaaattctacggattttaatgcattgttgtgagtaatagattttgtgagact 7858201  T
124 ttt 126  Q
    |||    
7858200 ttt 7858198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 3110210 - 3110042
Alignment:
25 tattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactt 124  Q
    ||||||||| |||||||||  ||||| |||||||| |     ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| |     
3110210 tattcaattgagattttgcctaacttgaaaattgtgtgcagttattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattg 3110111  T
125 tttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatag 193  Q
    |||| ||||||||| |  |||| |||||||| |||||||  || |||||||| | |||||| |||||||    
3110110 tttagtgtaaaatgtacatactgacaatctcgcacctagtattaagacttttctatctcccacacatag 3110042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 709102 - 709176
Alignment:
54 aattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagacttttta 128  Q
    ||||||||||| |||||||||| ||||  |||||| ||||||| ||    |||||||||||||||||||||||||    
709102 aattgtctattggtattcaaaagtctatagattttgatggattcttggatgtaatggattttgtgagacttttta 709176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 5957287 - 5957391
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||  ||  |||||  ||||||||||| |||||||||| ||||  |||||||||  ||| ||  |  |||||||||||||||||||    
5957287 gtattcaattaagatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttaatatattttttcgtataatggattttgtgagact 5957386  T
124 tttta 128  Q
    |||||    
5957387 tttta 5957391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 7100322 - 7100426
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||  ||  |||||  ||||||| ||| |||||||||| ||||  |||||| ||||||| ||    | ||||||||||||||||||    
7100322 gtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagact 7100421  T
124 tttta 128  Q
    |||||    
7100422 tttta 7100426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 8794308 - 8794204
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||  ||  |||||  ||||||| ||| |||||||||| ||||  |||||| ||||||| ||    | ||||||||||||||||||    
8794308 gtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagact 8794209  T
124 tttta 128  Q
    |||||    
8794208 tttta 8794204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 20157691 - 20157255
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
20157691 attcagtggtattcaattcagattttgcacaacttaaatattgtctattggtattcaaaattctaaggattttaatagattgttatgagtaatggatttt 20157592  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgagannnnnnnnaattgc 215  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||        | ||||    
20157591 gtgagactttttagtgtaaaatgcatctactaacaatctcacacctagctttgagacttttttgtctcccacacatagtcttgagattttttttagttgc 20157492  T
216 ttctcgttattttcnnnnnnnacagtagttgcttctcgagtctcgacgttgctgttcacattccagtcc-nnnnnnntaaatcttcctgcacacgttata 314  Q
    ||||||||||||||       || | ||||||||||||||||||||| ||| ||||||| ||| |||||         |||||||||||||||||| | |    
20157491 ttctcgttattttc-ttttttacggaagttgcttctcgagtctcgacattgttgttcacgttcgagtccaaaaaaaaaaaatcttcctgcacacgtaaca 20157393  T
315 tagttatcacatttcacttaaaaatattatagattttactgttctttagcaattttgtacaagtaannnnnnnactaatatcatttttatcaagttataa 414  Q
    |||||||||||||                    |||||||||||||||||| |||||| ||||| |       ||||||||||||||||| |||||||||    
20157392 tagttatcacatt--------------------ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataa 20157313  T
415 agttttgtgcaagcagtaaaatatgaacaatatcattaaaatataaaatatcaaaatg 472  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
20157312 agttttgtgcaatcagtaaaatatgaacaatatcattaaaatataaaatataaaaatg 20157255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 34028863 - 34028681
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||    
34028863 cagtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattataaggattttaatggattgttacgagtaatggattttgtg 34028764  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
34028763 agactttttagtgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctgccacacatagtcttgaga 34028681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 24193420 - 24193237
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
24193420 attcagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggatttt 24193321  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttga 199  Q
    ||||||||||||| ||||||||| | |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||    
24193320 gtgagactttttagtgtaaaatgtacctactaacaatctcacacttaaccttgagacttttttgtctcccacacatagtcttga 24193237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 11534995 - 11535162
Alignment:
26 attcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagacttt 125  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
11534995 attcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattttgtgagacttt 11535094  T
126 ttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatag 193  Q
    ||| ||||||||| | |||||||||||||||||| || |||||||||||||||||||||| |||||||    
11535095 ttagtgtaaaatgtacctactaacaatctcacacataaccttgagacttttttgtctcccacacatag 11535162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 11998343 - 11998169
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
11998343 gtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggtttgttgtgagtaatggattttgtgagact 11998244  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttga 199  Q
    ||||| ||||||||| |||||| |||||||||||||| |||||||||| ||||||||||||| ||||||| |||||    
11998243 ttttagtgtaaaatgtatctaccaacaatctcacacc-agccttgagatttttttgtctcccacacatagccttga 11998169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 6289432 - 6289250
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
6289432 cagtggtattcaattgagattttgcataacttaaaaattgtctgctagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 6289333  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
6289332 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 6289250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 29941098 - 29941280
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
29941098 cagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 29941197  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| || |||| |||||||    
29941198 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcccacatatagccttgaga 29941280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 293 - 472
Target Start/End: Complemental strand, 34028615 - 34028435
Alignment:
293 aaatcttcctgcacacgttatatagttatcacatttcacttaaaaatattatagattttactgttctttagcaattttgtacaagtaannnnnnn-acta 391  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| | ||| ||||||||||||||||||||| |||||||||||| |        ||||    
34028615 aaatcttcctgcacacgttacatagttatcacatttcactttaaagttttacagattttactgttctttagcagttttgtacaagtcattttttttacta 34028516  T
392 atatcatttttatcaagttataaagttttgtgcaagcagtaaaatatgaacaatatcattaaaatataaaatatcaaaatg 472  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||    
34028515 atatcatttttatgaagttataaagttttgtgcaagcagtaaaatatgaacattatcattcaaatataaaatataaaaatg 34028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 45547081 - 45547266
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| |||||| ||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| | |||||||||||||    
45547081 attcagtggtattcaattgagatttagcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtaagtaatggatttt 45547180  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    |||||| | |||| ||||||||| | ||||||||||||||||||||| ||||||||||||| | |||||| ||||||| |||||||    
45547181 gtgagattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgagacttttatatctcccacacatagccttgaga 45547266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 24193707 - 24193875
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggatttt-------aatggattgttatgagtaatggattttg 116  Q
    |||||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||| | |||||       ||||||||| | ||||||||||||||||    
24193707 gtattcaattgagattttgcacaacttaaaaactgtttattggtattcaaaattctacgaattttaatttttaatggattgctgtgagtaatggattttg 24193806  T
117 tgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    |||||||||||| ||||||||| | |||||||||||||||||| ||||||  |||||||| ||||||||    
24193807 tgagactttttagtgtaaaatgtacctactaacaatctcacacttagcctcaagacttttctgtctccc 24193875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 45485543 - 45485623
Alignment:
58 gtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactttttaatgtaaaatg 138  Q
    ||||| || |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | ||||  ||||||||    
45485543 gtctactaatattcaaaattctatggattttaatggattgttgtgagtaatggattttgtgagattgtttagcgtaaaatg 45485623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 18176395 - 18176291
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||  | | |||| ||| |||||||| ||||||||||||||   |||||||||||||| |  ||   | ||||||||||||||||    
18176395 gtattcaattgagattttataaatcttataaaatgtctattggtattcaaaattcttgagattttaatggattctattgtagagtggattttgtgagact 18176296  T
124 tttta 128  Q
    |||||    
18176295 tttta 18176291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 7488056 - 7487952
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||   | |||||| ||| |||||  | ||||| ||||||  | |||||||||||||||  | || |||||||||| |||||||||    
7488056 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 7487957  T
124 tttta 128  Q
    |||||    
7487956 tttta 7487952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 472
Target Start/End: Original strand, 40097244 - 40097679
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
40097244 attcagtggtattcaattcagattttgcacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttatgactaatggatttt 40097343  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagac-ttttttgtctcccgcacatagtcttgagannnnnnnnaattg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||        | |||    
40097344 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagctttgagactttttttgtctcccacacatagtcttgagattttttttagttg 40097443  T
215 cttctcgttattttcnnnnnnnacagtagttgcttctcgagtctcgacgttgctgttcacattccagtccnnnnnnntaaatcttcctgcacacgttata 314  Q
    |||||||||||||||       ||   |||| |||||||||||||||||||| ||||||| |||||||||        ||||||||||||||| || | |    
40097444 cttctcgttattttc-ttttttacgaaagttacttctcgagtctcgacgttgttgttcacgttccagtccaaaaaaa-aaatcttcctgcacaggtaaca 40097541  T
315 tagttatcacatttcacttaaaaatattatagattttactgttctttagcaattttgtacaagtaannnnnnnactaatatcatttttatcaagttataa 414  Q
    ||||||||||||||                   |||||||||||||||||| |||||| ||||| |       ||||||||||||||||| |||||||||    
40097542 tagttatcacattt-------------------ttttactgttctttagcagttttgtgcaagtcatttttttactaatatcatttttatgaagttataa 40097622  T
415 agttttgtgcaagcagtaaaatatgaacaatatcattaaaatataaaatatcaaaatg 472  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
40097623 ag-tttgtgcaatcagtaaaatatgaacaatatcattaaaatataaaatataaaaatg 40097679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 30110956 - 30111138
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  || ||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
30110956 cagtggtattcaattgagattttgcataacttaaaaattgtctgctattattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 30111055  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
30111056 agattgtttagtgtaaaatgtatctattaacaatctcacacctaaccttgagacttttttgtctcccacacatagccttgaga 30111138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 43057612 - 43057430
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
43057612 cagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 43057513  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||    
43057512 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcccacacatagccttgaga 43057430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 152011 - 152185
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
152011 cagtggtattcaattgagattttgcataacttaaaaattgtctaatggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 152110  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatag 193  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| |||||||    
152111 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcccacacatag 152185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 27418573 - 27418391
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  ||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||    
27418573 cagtggtattcaattgagattttgcataacttaaaaattgtctgctagtaatcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 27418474  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||| |||| || |||||||    
27418473 agattgtttagtgtaaaatgtatctattaacaatctcacacctaaccttgagactttttggtctcccacacaaagccttgaga 27418391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 35090032 - 35089855
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||| ||||||||||| |    
35090032 gtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtgagatt 35089933  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
     |||  | ||||||| | ||||||||||||||||||||| ||||||||||||| | |||||| ||||||| |||||||    
35089932 gtttggtataaaatgtacctactaacaatctcacacctaaccttgagacttttctatctcccacacatagccttgaga 35089855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 39301176 - 39301005
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||           
39301176 cagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatagattgttgtgagtaatgga------- 39301084  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagac-ttttttgtctcccgcacatagtcttgaga 201  Q
         ||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||||| || |||| |||||||    
39301083 -----ttttaatgtaaaatgtacctactaacaatctcacacctaaccttgagactttttttgtctcccacatatagccttgaga 39301005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 47914988 - 47914886
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  |||||||||||| ||||  |||||| |||||||||| ||||||||||||||||||    
47914988 cagtggtattcaattgagattttgcataacttaaaaattgtctgctagtattcaaaactctacagatttttatggattgttgtgagtaatggattttgtg 47914889  T
119 aga 121  Q
    |||    
47914888 aga 47914886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 47914149 - 47914078
Alignment:
130 tgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
47914149 tgtaaaatgtacctactaacaatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 47914078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 42678119 - 42678015
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||    ||||||| ||| |||||||| |||||||||| |||   |||||||||||||| || ||   |||||||||| |||||||    
42678119 gtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttatgagact 42678020  T
124 tttta 128  Q
    |||||    
42678019 tttta 42678015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 46037276 - 46037172
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||  ||  |||||  ||||||||||| |||||||||| ||||  |||||| ||||||| ||    | ||||||||||||||||||    
46037276 gtattcaattgagatttctcatgacttatgaattgtctattggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagact 46037177  T
124 tttta 128  Q
    |||||    
46037176 tttta 46037172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 34115378 - 34115293
Alignment:
45 caacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactttttaat 130  Q
    ||||||| ||| ||| |||  |||||||||| |||   |||||||||||||| || ||  || |||||||||||||||||||||||    
34115378 caacttataaaatgtttataggtattcaaaaatctgtagattttaatggattcttttgtatagtggattttgtgagactttttaat 34115293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 31494397 - 31494469
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggatt 96  Q
    |||||||||  |||||||  |||||||||||||||||| || ||||| |||| | ||  ||||||||||||||    
31494397 gtattcaatcaagattttttacaacttaaaaattgtctcttggtattaaaaaatgtattgattttaatggatt 31494469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 26336226 - 26336403
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
26336226 gtattcaattgagattttacacaacttaaaaattgtttattggtattcaaaattctaaggattttaatggattattgtgagtaatggattttgtgagact 26336325  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
26336326 ttttagtgtaaaatgtatctaccaacaatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 26336403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 45332824 - 45333001
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||    
45332824 gtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttgtgagtaatggattttatgaaact 45332923  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
45332924 ttttagtgtaaaatgtatctaccaacaatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 45333001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 45340514 - 45340691
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||    
45340514 gtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatggattgttgtgagtaatggattttatgaaact 45340613  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
45340614 ttttagtgtaaaatgtatctaccaacaatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 45340691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 42720877 - 42721055
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
42720877 gtattcaattgagattttacacaacttaaaaattgtctattggtattcaaaattctaaggattttaatgggttgttgtgagtaatggattttgtgagact 42720976  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagac-ttttttgtctcccgcacatagtcttgaga 201  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||    
42720977 ttttagtgtaaaatgtatctaccaacaatctcacacctagccttgagactttttttgtctcccacacatagccttgaga 42721055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 47685294 - 47685477
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||    
47685294 attcagtggtattcaattgagattttgctcaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatagatttt 47685393  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttga 199  Q
    | ||||||||||| ||||||||| | |||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||    
47685394 gcgagactttttagtgtaaaatgtacctactaacaatctcacacctaaacttgagacttttttgtctcccacacatagccttga 47685477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 54509867 - 54510039
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||   |||||||||||||    
54509867 cagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttatg---aatggattttgtg 54509963  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagac-ttttttgtctcccgcacatag 193  Q
    |||||||||| ||||||||| | ||||||||||||||||||||| ||||||| | ||||||||||||| |||||||    
54509964 agactttttagtgtaaaatgtacctactaacaatctcacacctaaccttgaggctttttttgtctcccacacatag 54510039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 8880597 - 8880763
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||| ||||||||    
8880597 cagtggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtg 8880696  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||    
8880697 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctgtctccc 8880763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 8583939 - 8583754
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||| |||||    
8583939 attcagtggtattcaattaagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaatttt 8583840  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    |||||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||  ||||||| |||||||    
8583839 gtgagattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccaacacatagccttgaga 8583754  T

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Target: chr4; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 33450105 - 33449944
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||     
33450105 gtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattctacggattttaatggattattgtgagtaatggattttgtgagaca 33450006  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    ||||| ||||||||| |||||||||||||||||||| ||||||  | |||||| ||||||||    
33450005 ttttagtgtaaaatgtatctactaacaatctcacacatagcctcaacacttttctgtctccc 33449944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 44930025 - 44930210
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||||   |||||||||| |||| |||||||||||||||||| ||||||| |||||||    
44930025 attcagtggtattcaattgagattttgcataacttaaaaattgtctacgggtattcaaaactctacggattttaatggattgttgtgagtaaaggatttt 44930124  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    |||||| | |||| ||||||||| | |||||||||||||||||||||||||||||| |||| | |||||| ||||||| |||||||    
44930125 gtgagattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagatttttctatctcccacacatagccttgaga 44930210  T

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Target: chr4; HSP #11
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 42218377 - 42218195
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| |  ||||||||| |||| |||||||||||||||||| ||||||||| ||||||||    
42218377 cagtggtattcaattgagattttgcataacttaaaaattgtctactgatattcaaaactctacggattttaatggattgttgtgagtaatgaattttgtg 42218278  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||  ||||||| |||||||    
42218277 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcctacacatagccttgaga 42218195  T

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Target: chr4; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 52109564 - 52109741
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||||| |||||||||||||| ||    ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| |    
52109564 gtattcaattgagattttgcataacttaaaaattgtataccgatattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagatt 52109663  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
     |||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||| ||||||  |||||||    
52109664 gtttaatgtaaaatgtacctactaacaatcccacacctagccttgagacttttctgtctcccacacataaccttgaga 52109741  T

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Target: chr4; HSP #13
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 3435891 - 3435731
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| |||||||||| |||||||||||||| |  | |||||||||| |||| |||||||||||||||||| |||||||| ||||||    
3435891 attcagtggtattcaattgagattttgcataacttaaaaattgtgtgctggtattcaaaactctacggattttaatggattgttgtgagtaatagatttt 3435792  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagactttt 176  Q
    |||||| | |||| ||||||||| | |||||||||||||||||||||||||||||||||||    
3435791 gtgagattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagactttt 3435731  T

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Target: chr4; HSP #14
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 25935941 - 25936123
Alignment:
20 agtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtga 119  Q
    |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| ||   | |||||||||||||||| |||||||||||||||||||    
25935941 agtagtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactcatcgaattttaatggattgttgtgagtaatggattttgtga 25936040  T
120 gactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttt--tttgtctcccgcacatagtcttgaga 201  Q
    || | |||| ||||||||| | ||| ||||||||||||| ||||||||||||||||  | |||||||| |||||| ||||||||    
25936041 gattgtttagtgtaaaatgaacctattaacaatctcaca-ctagccttgagacttttctgtgtctcccacacataatcttgaga 25936123  T

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Target: chr4; HSP #15
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 40143934 - 40144095
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||                ||||||||    
40143934 gtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaagaattttaatggattgtt----------------gtgagact 40144017  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||||| ||||||||| | |||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||    
40144018 ttttagtgtaaaatgtacctactaacaatctcacacttaaccttgagacttttttgtctcccacacatagccttgaga 40144095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 7820292 - 7820373
Alignment:
112 ttttgtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatag 193  Q
    |||| ||||| | |||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||    
7820292 ttttatgagattgtttagtgtaaaatgcacctactaacaatctcacacctagcctggagacttttctgtctcccacacatag 7820373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Original strand, 7820242 - 7820288
Alignment:
46 aacttaaaaattgtctattagtattcaaaattctaaggattttaatg 92  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||||    
7820242 aacttaaaaattgtctactagtattcaaaactctacggattttaatg 7820288  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 28100507 - 28100404
Alignment:
25 tattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactt 124  Q
    ||||||||| ||||||  ||||||||| ||| ||||| ||||||||||||| |  |  |||||| ||||||| || |  | ||||||||||| |||||||    
28100507 tattcaattaagatttctcacaacttataaaatgtcttttagtattcaaaaattaatagattttgatggattcttttatggaatggattttgagagactt 28100408  T
125 ttta 128  Q
    ||||    
28100407 ttta 28100404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 38230930 - 38231034
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||  ||  |||||  ||||||| ||| |||||||||| ||||  |||||| ||||||| ||    | ||||||||||||||||||    
38230930 gtattcaattgagatttctcatgacttatgaattgtccattggtattcaaaagtctatagattttgatggattcttggatggaatggattttgtgagact 38231029  T
124 tttta 128  Q
    |||||    
38231030 tttta 38231034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 37567303 - 37567129
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| |||||| ||||||||||||||||||    
37567303 cagtagtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtacggattttaatgaattgttgtgagtaatggattttgtg 37567204  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatag 193  Q
    || ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
37567203 aggctttttagtgtaaaatgtatctactaacaatctcacacctaaccttgagacttttttgtctcccacacatag 37567129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 4302734 - 4302555
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||    
4302734 gtattcaattgagattttgcacaacttaaaaattgtctattagtattcaaaattgtaaggattttaatggattgttgtgagtaatggatttagcgagact 4302635  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagac--ttttttgtctcccgcacatagtcttgaga 201  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||||  ||||||||||||| ||||||| |||||||    
4302634 ttttagtgtaaaatgtacctactaacaatctcacacctagccttgagacatttttttgtctcccacacatagccttgaga 4302555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 30382605 - 30382432
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||  ||||||||    
30382605 cagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatcaattttgtg 30382506  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacata 192  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
30382505 agactttttagtgtaaaatgtacctactaacaatctcacatctaaccttgagacttttttgtctcccacacata 30382432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 43605295 - 43605113
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||  |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
43605295 cagtggtattcaattgagatttcgcataacttaaaaattgtctgctagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 43605196  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
43605195 agattgtttaatgtaaaatgtacttactaacaatctcacacctagccttgagacttttttgtctcccacacatagccttgaga 43605113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 10802702 - 10802536
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
10802702 cagtggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 10802603  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||    
10802602 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctgtctccc 10802536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 41386801 - 41386619
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||||||||| ||    
41386801 cagtggtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttatg 41386702  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||    
41386701 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcccacacatagccttgaga 41386619  T

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Target: chr8; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 4655197 - 4655382
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| |||||||||| |||||||||||||||||   |||||||||| |||| ||||||||||||||||||||||||||||||||||    
4655197 attcagtggtattcaattgagattttgcataacttaaaaattgtctaccggtattcaaaactctacggattttaatggattgttatgagtaatggatttt 4655296  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    |||||| | |||| ||||||||| |  |||||||||||||||||||||||||||||||||| | |||| | ||||||| |||||||    
4655297 gtgagattgtttagtgtaaaatgtacatactaacaatctcacacctagccttgagacttttctatctctcacacatagccttgaga 4655382  T

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Target: chr8; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 8502790 - 8502951
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||||    
8502790 gtattcaattaagattttgcacaacttaaaaattgtctattggtatttaaaattctacggattttaatggattgttgtgagtaatggattttatgagact 8502889  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    ||||| ||||||||| | |||||||||||||||||| ||||||| ||||||||  |||||||    
8502890 ttttagtgtaaaatgtacctactaacaatctcacacatagccttaagacttttccgtctccc 8502951  T

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Target: chr8; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 7148193 - 7148375
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| |||||| |||||||||| | | |||||||| |||| |||||||||||||||||| ||||||||||||||||||    
7148193 cagtggtattcaattgagattttgcataacttagaaattgtctactggcattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 7148292  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||    
7148293 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcccacacatagccttgaga 7148375  T

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Target: chr8; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 29260207 - 29260025
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
29260207 cagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 29260108  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| |  |||||||||||||||||||| ||||||||||||| | |||||| ||||||| |||||||    
29260107 agattgtttagtgtaaaatgtacgtactaacaatctcacacctaaccttgagacttttctatctcccacacatagccttgaga 29260025  T

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Target: chr8; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 40265212 - 40265046
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
40265212 cagtggtattcaattgagattttgcataacttaaaaattgtctaatggtattcaaaactctatggattttaatggattgttgtgagtaatggattttgtg 40265113  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||    
40265112 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctccc 40265046  T

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Target: chr8; HSP #12
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 42275130 - 42275308
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||| |    
42275130 gtattcaattgagattttgcataacttaaaaattgtctactagtattcaaaactctacggatttttatggattgttgtgagtaatggattttgtgagatt 42275229  T
124 ttttaatgtaaaatgcatctactaa-caatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
     |||| ||||||||| | ||||||| |||||||||||||||||||||||||||| |||||||| ||||||  |||||||    
42275230 gtttagtgtaaaatgtacctactaaccaatctcacacctagccttgagacttttctgtctcccacacataaccttgaga 42275308  T

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Target: chr8; HSP #13
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 2112944 - 2113126
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
2112944 cagtggtattcaattgagatttcgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 2113043  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||| ||||||||||||||||| ||||||||||| |||||||| || |||| |||||||    
2113044 agattgtttagtgtaaaatgtacctactgacaatctcacacctagcattgagacttttctgtctcccacatatagccttgaga 2113126  T

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Target: chr8; HSP #14
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 28619994 - 28620179
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||| | |||    
28619994 attcagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatgaacttt 28620093  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    |||||| | ||||||||| |||| | |||||||||||||||||||||  |||||||||||| |||||||| ||||||  |||||||    
28620094 gtgagattgtttaatgtacaatgtacctactaacaatctcacacctaatcttgagacttttctgtctcccacacataaccttgaga 28620179  T

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Target: chr8; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 9457696 - 9457848
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||  |||||||||| |||| |||||||||||||||||| ||||||||||||||| ||    
9457696 cagtggtattcaattgagattttgcataacttaaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatg 9457795  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgaga 171  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||| ||||||||    
9457796 agattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgaga 9457848  T

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Target: chr8; HSP #16
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 41965729 - 41965549
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||  ||||||| | |||||||||| ||||   |||||||||||||||| ||||||||||||||||||    
41965729 cagtggtattcaattgagattttgcataacttaaa--ttgtctactggtattcaaaactctacatattttaatggattgttgtgagtaatggattttgtg 41965632  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | |||||||||||||| |||||||||||||||||||| | |||||| ||||||| |||||||    
41965631 agattatttagtgtaaaatgtacctactaacaatctcgcacctagccttgagacttttctatctcccacacatagccttgaga 41965549  T

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Target: chr8; HSP #17
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 35142200 - 35142361
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||||||||  || |||||||| | ||||||| ||||||||||||||| |||||||    
35142200 gtattcaattaagattttgtacaacttaaaaattgtctattggtattcaaaatattacggattttattagattgttgtgagtaatggattttatgagact 35142299  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    ||||| ||||||||  | ||||||||| ||||||| |||||||  ||||||||  |||||||    
35142300 ttttagtgtaaaatctacctactaacactctcacaactagcctcaagacttttcggtctccc 35142361  T

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Target: chr8; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 9209189 - 9209325
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| | |||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||| || |||||  ||||||||    
9209189 cagtggtattcaattgaaattttggacaacttaaaaattgtctattggtattcaaaactctaaggattttaatagtttgttgtgggtaatttattttgtg 9209288  T
119 agactttttaatgtaaaatgcatctactaacaatctc 155  Q
    |||||||||| ||||||||| | ||||||||||||||    
9209289 agactttttagtgtaaaatgtacctactaacaatctc 9209325  T

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Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 40013350 - 40013264
Alignment:
95 ttgttatgagtaatggattttgtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    |||||||||||||||||||||     |||||||| | ||||||  | |||||||||||||||||| | |||||||||||||| ||||||||    
40013350 ttgttatgagtaatggatttta----actttttagtataaaatatacctactaacaatctcacacttggccttgagacttttctgtctccc 40013264  T

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Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 41965404 - 41965347
Alignment:
144 actaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    |||||||||||| |||||||||||||||||||| | |||||| ||||||| |||||||    
41965404 actaacaatctcgcacctagccttgagacttttctatctcccacacatagccttgaga 41965347  T

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Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 40013406 - 40013358
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctatt 64  Q
    ||||||| |||||||||| ||||||||||||||||||||||||| ||||    
40013406 attcagtggtattcaatttagattttgcacaacttaaaaattgtttatt 40013358  T

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Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 1605944 - 1605902
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtct 61  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
1605944 cagtagtattcaattgagattttgcataacttaaaaattgtct 1605902  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 39039013 - 39038945
Alignment:
60 ctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagacttttta 128  Q
    ||||| |||||||||| ||||   ||||||||||||| || ||  ||||| ||||||||||||||||||    
39039013 ctattggtattcaaaaatctataaattttaatggattcttttgtataatgaattttgtgagacttttta 39038945  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 43489064 - 43489168
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||   | |||||| ||| |||||  | ||||| ||||||  | |||||||||||||||  | || |||||||||| |||||||||    
43489064 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 43489163  T
124 tttta 128  Q
    |||||    
43489164 tttta 43489168  T

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Target: chr3 (Bit Score: 126; Significance: 9e-65; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 27593302 - 27593479
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| || ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
27593302 attcagtggtattcaattgaggttttgcacatcttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggatttt 27593401  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatag 193  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||||||||  |||||||    
27593402 gtgagactttttagtgtaaaatgtacctactaacaatctcacacctaaccttgagacttttttgtctccaacacatag 27593479  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 36054938 - 36054756
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  |||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||    
36054938 cagtggtattcaattgagattttgcataacttaaaaattgtctgctagttttcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 36054839  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
36054838 agattgtttagtgtaaaatgtatctattaacaatctcacacctaaccttgagacttttttgtctcccacacatagccttgaga 36054756  T

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Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 36786124 - 36786385
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||| ||| ||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||| ||    
36786124 cagtggtattcaattgagattttgcaaaactttaaacttgtctattggtattcaaaattgtaaggattttaatgaattgttgtgagtaatggattttatg 36786223  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgagannnnnnnnaattgcttc 218  Q
    |||||||||| ||||||||| | |||||||||||| ||||||| ||||||||||||||||||||| | ||||||| |||||||        | |||||||    
36786224 agactttttagtgtaaaatgtacctactaacaatcacacacct-gccttgagacttttttgtctctcacacatagccttgagattttttttagttgcttc 36786322  T
219 tcgttattttcnnnnnnnacagtagttgcttctcgagtctcgacgttgctgttcacattccagt 282  Q
    |||||||||||       || | ||||||||||||||||||||||||  ||||||| |||||||    
36786323 tcgttattttc-ttttttacggaagttgcttctcgagtctcgacgttattgttcacgttccagt 36786385  T

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Target: chr3; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 39338228 - 39338072
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||  ||    
39338228 cagtggtattcaattgagattttgcacaacttaaaaattgtctattggtattcaaaattgtaaggattttaatggattgttgtgagtaatggattt--tg 39338131  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttt 177  Q
    |||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||||    
39338130 agactttttagtgtaaaatgtacctactaacaatctcacacctaaccttgagacttttt 39338072  T

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Target: chr3; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 24150763 - 24150581
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||| | | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
24150763 cagtggtattcaattgagattttgcataacttaaaaattgtccactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 24150664  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||    
24150663 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcccacacatagccttgaga 24150581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 35731085 - 35731267
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
35731085 cagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 35731184  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||||| || |||||||||||||||||||| ||||||||||| | |||||| ||||||| |||||||    
35731185 agattgtttagtgtaaaatgcacctgctaacaatctcacacctagcattgagacttttctatctcccacacatagccttgaga 35731267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 26005768 - 26005604
Alignment:
37 attttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactttttaatgtaaaa 136  Q
    |||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| | |||| |||||||    
26005768 attttgcataacttaaaaattgtctattggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagattgtttagtgtaaaa 26005669  T
137 tgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    || | ||||||||||||||||||||||||||||||||||| | |||||| ||||||| |||||||    
26005668 tgtacctactaacaatctcacacctagccttgagacttttctatctcccacacatagccttgaga 26005604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 38629726 - 38629549
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||||| ||||||||||||||||| | |||||||||| | || |||||||||||||||||| ||||||||||||||||||||| |    
38629726 gtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactatacggattttaatggattgttgtgagtaatggattttgtgagatt 38629627  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
     |||| ||||||||| | |||||||||||||||||||||||||||||| |||| | |||||| ||||||| |||||||    
38629626 gtttagtgtaaaatgtacctactaacaatctcacacctagccttgagatttttctatctcccacacatagccttgaga 38629549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 46252134 - 46251961
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  | |||||||||| | || |||||||||||||||||| ||||||||||||||||||    
46252134 cagtggtattcaattgagattttgcataacttaaaaattgtctgctggtattcaaaactttacggattttaatggattgttgtgagtaatggattttgtg 46252035  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacata 192  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||||    
46252034 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctgtctcccacacata 46251961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 13662701 - 13662883
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||| ||||||||||||||||||||| | ||||||||||  ||| || ||||||||||||||| ||||||||||||||||||    
13662701 cagtggtattcaattgagatttcgcacaacttaaaaattgtctactcgtattcaaaacactacgggttttaatggattgttgtgagtaatggattttgtg 13662800  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| || ||||| ||||||  |||||||    
13662801 agattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctgcctcccacacataaccttgaga 13662883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 30588989 - 30589151
Alignment:
16 attcagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggatttt 115  Q
    ||||||| |||||||||| |||||| ||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| |||||||||||||||    
30588989 attcagtggtattcaattgagatttagcataacttaaaaattgtctactggtattcaaaactctacggattttaatggattgttgtgagtaatggatttt 30589088  T
116 gtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagactttttt 178  Q
    |||||| | |||| ||||||||| | ||||||||||||||||||||| |||||||||||||||    
30589089 gtgagattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgagactttttt 30589151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 50900378 - 50900206
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||| ||| |||||||||| ||||||||||||||||| | |||||||||| ||||  ||||||||||||||||| ||||||||||||||||||    
50900378 cagtggtattcgattgagattttgcataacttaaaaattgtctactggtattcaaaactctagagattttaatggattgttgtgagtaatggattttgtg 50900279  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacat 191  Q
    ||| | |||||||||||||| |  |||||||||||||||||||||||||||||||||| | |||||| |||||    
50900278 agattgtttaatgtaaaatgtacatactaacaatctcacacctagccttgagacttttctatctcccacacat 50900206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 52024130 - 52023955
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||  |    
52024130 cagtggtattcaattgagattttgcacaatttaaaaattgtctattagtaatcaaaattctacggattttaatggattgttgtgagtaatggattttaag 52024031  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttg 198  Q
    |||||||||| | ||||||| | ||| ||||||||||||||||| |    ||||||||||||||||| ||||||| ||||    
52024030 agactttttagtataaaatgtacctagtaacaatctcacacctaac----agacttttttgtctcccacacatagacttg 52023955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 26293492 - 26293316
Alignment:
25 tattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactt 124  Q
    |||| |||| |||||||||| |||||||||||||| || |||||||||||| |||| |||||||||||||||||| |||||||||||||||||| || |     
26293492 tatttaattgagattttgcataacttaaaaattgtttactagtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgtgattg 26293393  T
125 tttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    |||| ||||||||| | |||||||||| ||||||||||  |||||||||||| |||||||| ||||||| |||||||    
26293392 tttagtgtaaaatgtacctactaacaacctcacacctaatcttgagacttttctgtctcccacacatagccttgaga 26293316  T

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Target: chr3; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 26005914 - 26005770
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
26005914 cagtggtattcaattgagattttgcataacttaaaaattgtctactggtattcaaaactctatggattttaatggattgttgtgagtaatggattttgtg 26005815  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctag 163  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||||    
26005814 agattgtttagtgtaaaatgtacctactaacaatctcacacctag 26005770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 38682585 - 38682728
Alignment:
25 tattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagactt 124  Q
    ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| ||    
38682585 tattcaattgagattttgcacaacttaaaaattgt-tattggtattcaaaattctacggattttaatggattgttgtgagtaatggattttgagagattt 38682683  T
125 tttaatgtaaaatgcat---ctactaacaatctcacacctagcct 166  Q
    |||| | ||||||| |    |||||||||||||||||||||||||    
38682684 tttagtataaaatgtagtacctactaacaatctcacacctagcct 38682728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 19552079 - 19551907
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| ||||| |||| |||||||||| ||||||||||||||||| | |||||||||| ||||  ||||||||| |||||||          |||||||||    
19552079 cagtggtatttaattaagattttgcataacttaaaaattgtctagtggtattcaaaactctacagattttaattgattgtt----------gattttgtg 19551990  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    | | | |||| ||||||||| | ||| ||||||||||||||||||||||||||||||| | |||||| || |||| |||||||    
19551989 aaattgtttagtgtaaaatgtacctaataacaatctcacacctagccttgagacttttctttctcccacatatagccttgaga 19551907  T

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Target: chr3; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 26556036 - 26556123
Alignment:
105 taatggattttgtgagactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacata 192  Q
    ||||||||||||||||| | |||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| ||||||    
26556036 taatggattttgtgagattgtttagtgtaaaatgtacctactaacaatctcacacctagccttgagacttttctatctcccacacata 26556123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 26555967 - 26556044
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggatt 96  Q
    |||| |||||||||| |||||||||| |||||||||||||||||   |||||||||| |||| |||||||||||||||    
26555967 cagtggtattcaattgagattttgcataacttaaaaattgtctacgggtattcaaaactctacggattttaatggatt 26556044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Original strand, 36786402 - 36786447
Alignment:
298 ttcctgcacacgttatatagttatcacatttcacttaaaaatatta 343  Q
    ||||||||||||||| |||||||| ||||||||||| ||| |||||    
36786402 ttcctgcacacgttacatagttattacatttcactttaaagtatta 36786447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 85909 - 86013
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||  | |||||| ||| |||||  | ||||| ||||||  | |||||||| ||||||  | || |||||||||| |||||||||    
85909 gtattcaattaagatttttaagaacttataaaatgtctcgtggtattgaaaattagacggattttactggattcatttgtgtaatggattgtgtgagact 86008  T
124 tttta 128  Q
    |||||    
86009 tttta 86013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 23697165 - 23697269
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||   | |||||| ||| |||||  | ||||| ||||||  | |||||||||||||||  | || |||||||||| |||||||||    
23697165 gtattcaattaagatttctaagaacttataaaatgtctcgtggtattgaaaattagacggattttaatggattcatttgtgtaatggattgtgtgagact 23697264  T
124 tttta 128  Q
    |||||    
23697265 tttta 23697269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 6828723 - 6828548
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
6828723 cagtggtattcaattgagattttgcacaacttaaaaattgtctattgatattcaaaattgtaaggattttaatggattgttatgagtaatggattttgtg 6828624  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagactt-ttttgtctcccgcacatag 193  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||| ||||||||||| ||||||||||| |||||||    
6828623 agactttttagtgtaaaatgtacctactaacaatctcacatctaaccttgagactttttttgtctcccacacatag 6828548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 40410748 - 40410923
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| |    
40410748 gtattcaattgagattttgcataacttaaaaattgtctactcgtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtgagatt 40410847  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttga 199  Q
     |||| ||||||||| | |||||||||||||||||||||| |||||||||||| | |||||| ||||||| |||||    
40410848 gtttagtgtaaaatgtacctactaacaatctcacacctagacttgagacttttctatctcccacacatagccttga 40410923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 17518587 - 17518748
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||    
17518587 gtattcaattaagattttgcacaacttaaaaattgtttattgggattcaaaattctacggattttaatggaatgttgcgagtaatggattttgtgagact 17518686  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    ||||| ||||||||| | ||||||||||||||||||| |||||  |||||||| ||||||||    
17518687 ttttagtgtaaaatgtacctactaacaatctcacacccagcctcaagacttttctgtctccc 17518748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 10571269 - 10571430
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||| | | |||||| ||||||| | || |||||||||||||| |||    
10571269 gtattcaattaagattttgtacaacttaaaaattgtctattggtattcaaaattctatgaaatttaatagattgttgtcaggaatggattttgtgaaact 10571368  T
124 ttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctccc 185  Q
    ||||| | ||||||| |  |||||||||||||||||||| |||| |||||||| ||||||||    
10571369 ttttagtataaaatgtacatactaacaatctcacacctaaccttaagacttttctgtctccc 10571430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 2276101 - 2276027
Alignment:
54 aattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagacttttta 128  Q
    |||||||||||  ||||||||| ||||  |||||||||||||| || ||  ||||||||||||||||| ||||||    
2276101 aattgtctattgatattcaaaagtctatagattttaatggattcttttgtataatggattttgtgagatttttta 2276027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 26876311 - 26876357
Alignment:
25 tattcaattcagattttgcacaacttaaaaattgtctattagtattc 71  Q
    ||||||||  ||||||| ||||||||||||||||||| |||||||||    
26876311 tattcaatcaagatttttcacaacttaaaaattgtctcttagtattc 26876357  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 6902597 - 6902525
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggatt 96  Q
    |||||||||  |||||||  |||||||||||||||||| || |||||||||| | ||  ||||| ||||||||    
6902597 gtattcaatcaagattttttacaacttaaaaattgtctcttggtattcaaaaatgtattgatttcaatggatt 6902525  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 28594367 - 28594263
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    ||||||||||  |||||  ||||||||| ||| ||||| |  |||||||||| |  |  |||||||||||||| || |   |||||||||||||||||||    
28594367 gtattcaattaggatttctcacaacttataaaatgtctttcggtattcaaaaattgatagattttaatggattcttttatataatggattttgtgagact 28594268  T
124 tttta 128  Q
    |||||    
28594267 tttta 28594263  T

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Target: scaffold0016 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 81713 - 81531
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  | |||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
81713 cagtggtattcaattgagattttgcataacttaaaaattgtctcctggtattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 81614  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | |||| | ||||||| |||||||    
81613 agattgtttagtgtaaaatgtatctactaacaatctcacacctaaccttgagacttttctatctctcacacatagccttgaga 81531  T

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Target: scaffold0153 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 34745 - 34563
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  |  ||||||||| |||| |||||||||||||||||| ||||||||||||||||||    
34745 cagtggtattcaattgagattttgcataacttaaaaattgtctgctgatattcaaaactctacggattttaatggattgttgtgagtaatggattttgtg 34646  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgagacttttttgtctcccgcacatagtcttgaga 201  Q
    ||| | |||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | |||| | ||||||| |||||||    
34645 agattgtttagtgtaaaatgtatctactaacaatctcacacctaaccttgagacttttctatctctcacacatagccttgaga 34563  T

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Target: scaffold0237 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 21344 - 21192
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||  |||||||||| |||| |||||||||||||||||| ||||||||||||||| ||    
21344 cagtggtattcaattgagattttgcataacttaaaaattgtctatcggtattcaaaactctacggattttaatggattgttgtgagtaatggattttatg 21245  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacctagccttgaga 171  Q
    ||| | |||| ||||||||| | ||||||||||||||||||||| ||||||||    
21244 agattgtttagtgtaaaatgtacctactaacaatctcacacctaaccttgaga 21192  T

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Target: scaffold0202 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 16473 - 16309
Alignment:
19 cagtagtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtg 118  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||                  | ||||||||||||||||||    
16473 cagtggtattcaattgagattttgcataacttaaaaattgtctattagtattcaaaattcta------------------tgtgagtaatggattttgtg 16392  T
119 agactttttaatgtaaaatgcatctactaacaatctcacacc--tagccttgagacttttttgtctcccgcacatagtcttga 199  Q
    ||| | |||| |||||| || | |||||||||||||||||||  || ||||||||||||| |||||| | ||||||| |||||    
16391 agattgtttagtgtaaagtgtacctactaacaatctcacacctataaccttgagacttttatgtctctcacacatagccttga 16309  T

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Target: scaffold0472 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 1811 - 1707
Alignment:
24 gtattcaattcagattttgcacaacttaaaaattgtctattagtattcaaaattctaaggattttaatggattgttatgagtaatggattttgtgagact 123  Q
    |||||||||| ||||||    ||||||| ||| |||||||| |||||||||| |||   |||||||||||||| || ||   ||||||||||||||||||    
1811 gtattcaattaagatttgtaccaacttataaaatgtctattggtattcaaaaatctgcagattttaatggattcttttgtagaatggattttgtgagact 1712  T
124 tttta 128  Q
    |||||    
1711 tttta 1707  T

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