View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14397_low_5 (Length: 416)

Name: NF14397_low_5
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14397_low_5
NF14397_low_5
[»] chr7 (6 HSPs)
chr7 (13-205)||(4583616-4583808)
chr7 (247-399)||(4583364-4583516)
chr7 (13-215)||(4591130-4591332)
chr7 (14-213)||(4599815-4600013)
chr7 (247-401)||(4590902-4591050)
chr7 (13-174)||(4571863-4572024)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 4583808 - 4583616
Alignment:
Q  13 aatatctggatggactggcaactgctgaaaatatgaagacgtatgtagaacaacatccatttggtcaagaacatatcaccgaaaccagcgaatcttggga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4583808 aatatctggatggactggcaactgctgaaaatatgaagacgtatgtagaacaacatccatttggtcaagaacatatcactgaaaccagcgaatcttggga 4583709  T
Q  113 tttctacttcaatgttttcattagtctttatgcttatcaatctaaaaagagaaaatatggtttctttcagttgtaatatgatcaatttagtta 205  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4583708 cttctacttcaatgttttcattagtctttatgcttatcaatctaaaaagagaaaatatggtttctttcagttgtaatatgatcaatttagtta 4583616  T

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Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 247 - 399
Target Start/End: Complemental strand, 4583516 - 4583364
Alignment:
Q  247 tgaagaatattgaaaagaaatcttgttagttgaaattttgcagaaagtttgataaatgaatttgaaagatttgttttgagatgttaatcttacatattta 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4583516 tgaagaatattgaaaagaaatcttgttagttgaaattttgcagaaagtttgataaatgaatttgaaacatttgttttgagatgttaatcttacatattta 4583417  T
Q  347 tataatcttacattaagctgctacctatatatgatgttaatgcaacttaagat 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4583416 tataatcttacattaagctgctacctatatatgatgttaatgcaacttaagat 4583364  T

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Target: chr7; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 4591332 - 4591130
Alignment:
Q  13 aatatctggatggactggcaactgctgaaaatatgaagacgtatgtagaacaacatccatttggtcaagaacatatcaccgaaaccagcgaatcttggga 112  Q
    ||||||| ||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||| |||| | ||||| |  |||||||||||    
T  4591332 aatatcttgatggactggcaaatgctgaaaatatgtcgaagtatgtagaacaacatccatttggtcaagaacgtatcgctgaaacaaatgaatcttggga 4591233  T
Q  113 tttctacttcaatgttttcattagtctttatgcttatcaatctaaaaagagaaaatatggtttctttcagttgtaatatgatcaatttagttagtctgct 212  Q
     |||||| |||||||| ||| |||||||| || || |||| || |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4591232 cttctacctcaatgttatcaatagtctttctgtttgtcaacctgaaaagtaaaaacatggtttctttcagttgtaatatgatcaatttagttagtctgct 4591133  T
Q  213 atg 215  Q
    |||    
T  4591132 atg 4591130  T

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Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 4600013 - 4599815
Alignment:
Q  14 atatctggatggactggcaactgctgaaaatatgaagacgtatgtagaacaacatccatttggtcaagaacatatcaccgaaaccagcgaatcttgggat 113  Q
    |||| |||| ||| |||||| |||||||||||||  || |||||||||||||||||||||||||||||||| |||||| ||||  || ||| ||||||||    
T  4600013 atatgtggaaggattggcaaatgctgaaaatatgttgatgtatgtagaacaacatccatttggtcaagaacgtatcactgaaaaaagtgaagcttgggat 4599914  T
Q  114 ttctacttcaatgttttcattagtctttatgcttatcaatctaaaaagagaaaatatggtttctttcagttgtaatatgatcaatttagttagtctgcta 213  Q
    |||||| |||||||  ||| |||||||| | ||| |||| |||| ||| ||||| |||||||||| || ||| |||||||||||||| ||| ||||||||    
T  4599913 ttctacctcaatgtgatcaatagtctttctacttgtcaacctaagaagtgaaaa-atggtttcttgcaattggaatatgatcaattttgttggtctgcta 4599815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 401
Target Start/End: Complemental strand, 4591050 - 4590902
Alignment:
Q  247 tgaagaatattgaaaagaaatcttgttagttgaaattttgcagaaagtttgataaatgaatttgaaagatttgttttgagatgttaatcttacatatt-- 344  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||||||||||||| || ||        |||||||||      
T  4591050 tgaagaattttgaaaagaaatctggtttgttgaaattttgcagatagtttgaaaaatgaatttgaaagatttgttgtgtga--------ttacatattta 4590959  T
Q  345 tatataatcttacattaagctgctacctatatatgatgttaatgcaacttaagattg 401  Q
    ||||||||||| |||||| |||||| ||| || || |||||||||||||||||||||    
T  4590958 tatataatcttgcattaaactgctatctacatgtggtgttaatgcaacttaagattg 4590902  T

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Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 4572024 - 4571863
Alignment:
Q  13 aatatctggatggactggcaactgctgaaaatatgaagacgtatgtagaacaacatccatttggtcaagaacatatcaccgaaaccagcgaatcttggga 112  Q
    ||||||| || |||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||  ||||| ||||| |  |||| ||||||    
T  4572024 aatatctagaaggactggcaagtgctgaaaatatggtgaagtatgtagaacaacatccatttggtcaagaacggatcactgaaacaaatgaattttggga 4571925  T
Q  113 tttctacttcaatgttttcattagtctttatgcttatcaatctaaaaagagaaaatatggtt 174  Q
    ||| ||| |||||||| ||| |||| ||| ||||| |||| || ||||| ||| | ||||||    
T  4571924 tttttacctcaatgttatcaatagtatttctgcttgtcaacctgaaaagtgaagacatggtt 4571863  T

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