View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14397_low_8 (Length: 308)
Name: NF14397_low_8
Description: NF14397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14397_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 32358987 - 32359190
Alignment:
| Q |
42 |
tgtgcaattgtaacaagctgctgcaaatttcattaaccctatacagctgaatataagcaagctttcatctttttattcaagttgtataactagaagctta |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32358987 |
tgtgcaattgtaacaagctgctgcaaatttcattaaccctattcagctgaatat----aagctttcatctttttattcaagttgtataactagaagctta |
32359082 |
T |
|
| Q |
142 |
atgctctgattgtatgataaactagtcatttgttggattttcaattattgctctctggatgtgctgctaattcccactatcattttgacatttaaaaaga |
241 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
32359083 |
atg--ctgattgtatgataaactagtcatttgttgaattttcaattactgctctctggat---ttgctaattccaactatcattttgacatttagaaaga |
32359177 |
T |
|
| Q |
242 |
tcgaatattttat |
254 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
32359178 |
ttgaatattttat |
32359190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University