View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14398_high_1 (Length: 682)
Name: NF14398_high_1
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 652
Target Start/End: Complemental strand, 36210930 - 36210270
Alignment:
| Q |
14 |
cataggatcgtgaagcatcttcataaatagtgaatcagcaatattaaacacaaatgattcagccatgtaaatgttagcagaaatagtggtagcagattag |
113 |
Q |
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| T |
36210930 |
cataggatcgtgaagcatcttcataaatagtgaatcagcaatattaaacacaaatgattcagccatgtcaatgttagcagaaatagtggtagcagattag |
36210831 |
T |
|
| Q |
114 |
taactgtgccttctgatcaagtaacaagaatagccaatattttaaaaaagaaaagaagacac---agcacaagatcagttatgtaaaaataagtattgag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||| |
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| T |
36210830 |
taactgtgccttctgatcaagtaacaagaatagccaatattttaaaaaagaaaagaagacacagcagcacaagctcacttatgt-aaaataagtattgag |
36210732 |
T |
|
| Q |
211 |
cagctcaccaagttttcataatatcatgcatgat---taatgttgatttttgttgactctgcatggtttcccattatgacgtggcaatgtgcttgggccg |
307 |
Q |
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| T |
36210731 |
cagctcaccaagttttcataatatcatgcatgatgtggcat-ttgactattgttgactctgcatggtttcacattatgacgtggcaatgtgcttgggccg |
36210633 |
T |
|
| Q |
308 |
ggttgtaagttgtaaccatagatagaaggcccaactctgttatcctaaagtagcccactgg-------tatcaatgaaacatgtgtctttttaggtgtat |
400 |
Q |
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| T |
36210632 |
g-------gttgtaacc----atagaaggcccaactctgttatcctaaagtatcccactggtatcaactatcaatgtaacatgtgtctttttaggtgtat |
36210544 |
T |
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| Q |
401 |
gccagcgaaggttcttctcctatcatatcacaaatgaataaattgtgcaagaatgatctcaatatt----------------------agcttaattaag |
478 |
Q |
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| T |
36210543 |
gccagcgaaggttcttctcctatcatatcacaaatgaataaattgtgcaagaatgatctcaatgttattatattagattattaactttagcttaattaag |
36210444 |
T |
|
| Q |
479 |
gagagaatagaaatggcagagcattttgcgaaacagggaaaggaatatgcagattcgaggccaagttatccacctcaactcttccaattcatagcttcta |
578 |
Q |
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| T |
36210443 |
gagagaatagaaatggcagagcattttgcgaaacagggaaaggaatatgcagattcaaggccaagttatccaccacaactcttccaattcatagcttcta |
36210344 |
T |
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| Q |
579 |
aaactccctctcacgaccttgcttgggacgtggccacaggaaccggccaagctgccaaatctgtgcgtatcttc |
652 |
Q |
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| T |
36210343 |
aaactccctctcacgaccttgcttgggacgtggccacaggaaccggccaagctgccaaatctgtgcgtatcttc |
36210270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 485 - 642
Target Start/End: Original strand, 35401696 - 35401853
Alignment:
| Q |
485 |
atagaaatggcagagcattttgcgaaacagggaaaggaatatgcagattcgaggccaagttatccacctcaactcttccaattcatagcttctaaaactc |
584 |
Q |
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| T |
35401696 |
atagagatggcagagctttttgtgaatcagggaaaggaatacgcagatgcaaggccaagttatccaccacaactctttcaattcatagcttctaaaactc |
35401795 |
T |
|
| Q |
585 |
cctctcacgaccttgcttgggacgtggccacaggaaccggccaagctgccaaatctgt |
642 |
Q |
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| T |
35401796 |
cctctcacaaccttgtttgggatgttgctactggaagtggccaagccgccaaatctgt |
35401853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 491 - 642
Target Start/End: Original strand, 35398974 - 35399125
Alignment:
| Q |
491 |
atggcagagcattttgcgaaacagggaaaggaatatgcagattcgaggccaagttatccacctcaactcttccaattcatagcttctaaaactccctctc |
590 |
Q |
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| T |
35398974 |
atggcagagctttttgtgaatcagggaaaggaatacgcagatgcaaggccaagttatccaccacaactctttcaattcatagcttctaaaactccctctc |
35399073 |
T |
|
| Q |
591 |
acgaccttgcttgggacgtggccacaggaaccggccaagctgccaaatctgt |
642 |
Q |
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| T |
35399074 |
acaaccttgtttgggatgttgctactggaagtggccaagccgccaaatctgt |
35399125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 472 - 646
Target Start/End: Complemental strand, 36206683 - 36206509
Alignment:
| Q |
472 |
aattaaggagagaatagaaatggcagagcattttgcgaaacagggaaaggaatatgcagattcgaggccaagttatccacctcaactcttccaattcata |
571 |
Q |
| |
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||||||| |||||||||| |||||||| | || || ||| |||| || ||||||| || || | ||||||||||||||||| |||||||||||||||||| |
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| T |
36206683 |
aattaagaagagaatagagatggcagaactttatgtgaatcaggcaagggaatattcaaatgcaaggccaagttatccaccacaactcttccaattcata |
36206584 |
T |
|
| Q |
572 |
gcttctaaaactccctctcacgaccttgcttgggacgtggccacaggaaccggccaagctgccaaatctgtgcgt |
646 |
Q |
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| T |
36206583 |
gcttctaaaactccctctcacaacctcgtttgggacgttgccaccggaagtggacaagctcccaaatctgtgcgt |
36206509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 35978236 - 35978280
Alignment:
| Q |
42 |
agtgaatcagcaatattaaacacaaatgattcagccatgtaaatg |
86 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
35978236 |
agtgaatgagcaatatcaaacacaaatgattcagccatggaaatg |
35978280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 35999648 - 35999692
Alignment:
| Q |
42 |
agtgaatcagcaatattaaacacaaatgattcagccatgtaaatg |
86 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
35999648 |
agtgaatgagcaatatcaaacacaaatgattcagccatggaaatg |
35999692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 36216807 - 36216771
Alignment:
| Q |
118 |
tgtgccttctgatcaagtaacaagaatagccaatatt |
154 |
Q |
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| T |
36216807 |
tgtgccttcagatcaagtaacaagaatagccaatatt |
36216771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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