View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14398_high_11 (Length: 305)

Name: NF14398_high_11
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14398_high_11
NF14398_high_11
[»] chr1 (19 HSPs)
chr1 (16-305)||(35192617-35192906)
chr1 (20-171)||(35203090-35203242)
chr1 (20-147)||(35272855-35272982)
chr1 (20-143)||(45526140-45526263)
chr1 (20-143)||(35476933-35477056)
chr1 (20-143)||(45534344-45534467)
chr1 (61-171)||(35148839-35148949)
chr1 (20-147)||(35295198-35295325)
chr1 (20-145)||(35213519-35213644)
chr1 (28-102)||(35216951-35217025)
chr1 (16-99)||(35228427-35228510)
chr1 (20-83)||(8640313-8640376)
chr1 (20-102)||(35222768-35222850)
chr1 (28-146)||(35265294-35265412)
chr1 (22-123)||(35145186-35145287)
chr1 (28-81)||(35206425-35206478)
chr1 (251-291)||(35202961-35203001)
chr1 (16-81)||(35249608-35249673)
chr1 (45-81)||(19267391-19267427)
[»] chr2 (1 HSPs)
chr2 (20-88)||(33137645-33137713)
[»] chr3 (3 HSPs)
chr3 (20-88)||(17663866-17663934)
chr3 (20-88)||(19246367-19246435)
chr3 (20-100)||(898926-899006)
[»] chr7 (1 HSPs)
chr7 (34-81)||(38635327-38635374)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 35192906 - 35192617
Alignment:
Q  16 atgtagagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattgga 115  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35192906 atgtagagctttcaattggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattgga 35192807  T
Q  116 actggatttctatgcctaattccaggttagcttagatattaagttttctattttttctcatgtcatgtgttaatcataatactattattttctattacca 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35192806 actggatttctatgcctaattctaggttagcttagatattaagttttctattttttctcatgtcatgtgttaatcataatactattattttctattacca 35192707  T
Q  216 cccaatatattttcattaacagttatattattacgcctttatgaatacaaaatttagttgaggcaaatggataagtgtcaagtgaaacgc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  35192706 cccaatatattttcattaacagttatattattacgcctttatgaatacaaaatttagttgaggcaaatggataagtgtccagtgatacgc 35192617  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 35203242 - 35203090
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactg 119  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||   || |||||||||||    
T  35203242 agagcattcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctccattgcttggggtaatgatgatcgatattggaactg 35203143  T
Q  120 gatttctatgcctaattccaggttagcttagat-attaagttttctatttttt 171  Q
    |||| |||||||| |||||||||||||||||||  |||||||||||| |||||    
T  35203142 gattgctatgcctgattccaggttagcttagatctttaagttttctaattttt 35203090  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 35272982 - 35272855
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactg 119  Q
    ||||| ||||||| || |||||| |||||||||||||||| |||||| |||||||||||||  | |||| ||||||||||||| ||||||||||||||||    
T  35272982 agagcattcaattagagagaaagagtggaaaaaagtgttacatgctttctgctagatctcttgcaattgtttggggtgatgatagacgctattggaactg 35272883  T
Q  120 gatttctatgcctaattccaggttagct 147  Q
    ||||||||||||| ||||||||||||||    
T  35272882 gatttctatgcctgattccaggttagct 35272855  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 45526263 - 45526140
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactg 119  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||  |||||||||||||   |||||||||| |||    
T  45526263 agagctttcaattggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctccacattatttggggtgatgatgaccgctattggatctg 45526164  T
Q  120 gatttctatgcctaattccaggtt 143  Q
    || | |||||||| ||||||||||    
T  45526163 gactgctatgcctgattccaggtt 45526140  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 35477056 - 35476933
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactg 119  Q
    ||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||   || ||||| |||||    
T  35477056 agagccttcaattggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctcgccattgcttggggtgatgatgatcgatattgcaactg 35476957  T
Q  120 gatttctatgcctaattccaggtt 143  Q
    |||| || | ||| ||||||||||    
T  35476956 gattgctgtacctgattccaggtt 35476933  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 45534467 - 45534344
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactg 119  Q
    ||||||||||||| ||||||||  |||| ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||    ||||| ||||||||    
T  45534467 agagctttcaattagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctcgccattacttggggtgatgacaaccgctactggaactg 45534368  T
Q  120 gatttctatgcctaattccaggtt 143  Q
    |||| |||||||| ||||||||||    
T  45534367 gattgctatgcctgattccaggtt 45534344  T

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Target: chr1; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 35148949 - 35148839
Alignment:
Q  61 atgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactggatttctatgcctaattccaggttagcttagatattaagtt 160  Q
    |||||| ||||||||||||||  |||||||||||||||||||   ||||||||||||||||||  ||||||| | ||||||||||||||||| |||||||    
T  35148949 atgctttctgctagatctctcagcattgcttggggtgatgataagcgctattggaactggattaatatgcctgactccaggttagcttagatcttaagtt 35148850  T
Q  161 ttctatttttt 171  Q
    |||||||||||    
T  35148849 ttctatttttt 35148839  T

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Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 35295198 - 35295325
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactg 119  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| | |||  |||||||||   |   ||| ||||||||||    
T  35295198 agagctttcaattggagagaaagagtgggaaaaagtgttatatgcttgctgctagatctctcactattaattggggtgactctgagcgccattggaactg 35295297  T
Q  120 gatttctatgcctaattccaggttagct 147  Q
    ||||||||||| | ||||||||||||||    
T  35295298 gatttctatgcatgattccaggttagct 35295325  T

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Target: chr1; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 35213644 - 35213519
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactg 119  Q
    |||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||   || ||||| |||||    
T  35213644 agagctttcaattggagagaaaaagtggaaaaaaatgttatatgcttgctgctagatctctcggcattgcttggggtgatgatgatcgatattgcaactg 35213545  T
Q  120 gatttctatgcctaattccaggttag 145  Q
    ||||  | ||||| |||| |||||||    
T  35213544 gattgatgtgcctgattctaggttag 35213519  T

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Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 35217025 - 35216951
Alignment:
Q  28 caattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgat 102  Q
    ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||    
T  35217025 caattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctctccattgcttgcggtgatgat 35216951  T

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Target: chr1; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 35228510 - 35228427
Alignment:
Q  16 atgtagagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgat 99  Q
    |||||||| ||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||  ||||| |||||||||||    
T  35228510 atgtagagttttcaattggagagaaagagtggaaagaagtgttatatgctttctgctagatctcttgccattacttggggtgat 35228427  T

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Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 8640376 - 8640313
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctc 83  Q
    ||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||    
T  8640376 agagcgttcaattggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctctc 8640313  T

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Target: chr1; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 35222850 - 35222768
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgat 102  Q
    ||||| ||||||||||||||||| ||||||||||||||   |||||||||||||||||||||  ||||| ||||| |||||||    
T  35222850 agagcgttcaattggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctcgacattgattgggatgatgat 35222768  T

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Target: chr1; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 35265412 - 35265294
Alignment:
Q  28 caattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactggatttcta 127  Q
    |||||||| |||||| |||||||||||||||| |||||| |||||||||||||  | |||| ||||||||||  |   | ||| |||||||||||| ||     
T  35265412 caattggacagaaagagtggaaaaaagtgttacatgctttctgctagatctcttgcaattgtttggggtgatactaagcactactggaactggattcctt 35265313  T
Q  128 tgcctaattccaggttagc 146  Q
    ||||| |||||||||||||    
T  35265312 tgcctgattccaggttagc 35265294  T

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Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 35145287 - 35145186
Alignment:
Q  22 agctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatgatcgacgctattggaactgga 121  Q
    |||||||||||| ||||| || || ||||||||||||| ||| || |||||||||||||| ||||||||||| ||||||||   || ||||| |||||||    
T  35145287 agctttcaattgaatagagagagtagaaaaaagtgttacatggtttctgctagatctctcgccattgcttggagtgatgatgatcgatattgcaactgga 35145188  T
Q  122 tt 123  Q
    ||    
T  35145187 tt 35145186  T

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Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 35206478 - 35206425
Alignment:
Q  28 caattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctc 81  Q
    ||||||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  35206478 caattggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 291
Target Start/End: Complemental strand, 35203001 - 35202961
Alignment:
Q  251 cctttatgaatacaaaatttagttgaggcaaatggataagt 291  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35203001 cctttatgaatacaaaatttagttgaggcaaatggataagt 35202961  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 35249673 - 35249608
Alignment:
Q  16 atgtagagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctc 81  Q
    |||||||||||||||||||||| |||| |||||||| | ||||| | | || ||||||||| ||||    
T  35249673 atgtagagctttcaattggataaaaagagtggaaaagactgttacacgttttctgctagatttctc 35249608  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 19267391 - 19267427
Alignment:
Q  45 tggaaaaaagtgttatatgcttgctgctagatctctc 81  Q
    ||||||||||||||| || ||||||||||||||||||    
T  19267391 tggaaaaaagtgttacattcttgctgctagatctctc 19267427  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 33137645 - 33137713
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattg 88  Q
    |||||||||||||| | |||||| ||||| |||||||||| ||||||||||||||||||||| ||||||    
T  33137645 agagctttcaattgcacagaaagagtggacaaaagtgttacatgcttgctgctagatctctcaccattg 33137713  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 17663866 - 17663934
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattg 88  Q
    |||||||||||||| | |||||| ||||| | ||||||||  |||||||||||||||||||| ||||||    
T  17663866 agagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctcaccattg 17663934  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 19246367 - 19246435
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattg 88  Q
    |||||||||||||| | |||||| ||||| | ||||||||  |||||||||||||||||||| ||||||    
T  19246367 agagctttcaattgcaaagaaagagtggacagaagtgttacctgcttgctgctagatctctcaccattg 19246435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 898926 - 899006
Alignment:
Q  20 agagctttcaattggatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctctccattgcttggggtgatg 100  Q
    |||||||| |||||||||| ||  |||||||||  ||||| ||||||||||| ||||||||| |||||  ||| |||||||    
T  898926 agagctttaaattggataggaaaagtggaaaaatatgttacatgcttgctgccagatctctcaccattcattgcggtgatg 899006  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 38635374 - 38635327
Alignment:
Q  34 gatagaaagcgtggaaaaaagtgttatatgcttgctgctagatctctc 81  Q
    ||||||||| |||||||||||||||| || |||||||||| |||||||    
T  38635374 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 38635327  T

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