View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14398_high_12 (Length: 299)
Name: NF14398_high_12
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 248797 - 249087
Alignment:
| Q |
1 |
tgacaattacgaataaagtattgtgctcctaactaatagcttcaaatatcacaatggatgaacatttgagaatcttgtacaaactgatctagcaatagtg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
248797 |
tgacaattaccaataaagtattgtgctcctaattaatagcttcaaatatcacaatggatgaacatttgagaatcttgtaaaaactgatctagcaatagtg |
248896 |
T |
|
| Q |
101 |
attgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacggtcaactaaaacacaaatcaaagtgct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248897 |
attgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacggtcaactaaaacacaaatcaaagtgct |
248996 |
T |
|
| Q |
201 |
taaggattatctgcacaatcaaagtgcttagacattttagatcctgaggtagtaaacctcaaatatgttttgtccattgcatgtctgtgtt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
248997 |
taaggattatctgcacaatcaaagtgcttagacattttagatcctgaggtagtaaacctcaaatatgttttgtccattgcatgtctgtgtt |
249087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 39866157 - 39865970
Alignment:
| Q |
1 |
tgacaattacgaataaagtattgtgctcctaactaatagcttcaaatatcacaatggatgaacatttgagaatcttgtacaaactgatctagcaatagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
39866157 |
tgacaattacgaataaagtattgtgctcctaaataatagcttcaaatatcacaacagatgaacatttgagaatcttgtacaaactgatctaacactagtg |
39866058 |
T |
|
| Q |
101 |
attgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacggtcaactaaaacaca |
188 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
39866057 |
attgttctaaacaaaattattcatgaaacgcaacttgaggactttgatattaaggcagaaaagaagggacacggtaaactaaaacaca |
39865970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 19782639 - 19782826
Alignment:
| Q |
1 |
tgacaattacgaataaagtattgtgctcctaactaatagcttcaaatatcacaatggatgaacatttgagaatcttgtacaaactgatctagcaatagtg |
100 |
Q |
| |
|
|||||||||| |||||||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19782639 |
tgacaattacaaataaagtattgtgttcttaattaatagcttcaaatatcacaacagatgaacatttgagaatcttgtacaaactgatctagcactagtg |
19782738 |
T |
|
| Q |
101 |
attgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacggtcaactaaaacaca |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19782739 |
attgttctaaacaaaattattcatgaaatgcaacttgaggaatttgatattaaggcagaaaagaatggacacggtcaactaaaacaca |
19782826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 16632538 - 16632724
Alignment:
| Q |
2 |
gacaattacgaataaagtattgtgctcctaactaatagcttcaaatatcacaatggatgaacatttgagaatcttgtacaaactgatctagcaatagtga |
101 |
Q |
| |
|
||||||||||| ||||||| | ||||||||| |||||| |||||||||||||| |||| ||||||||||||| |||||||| |||||||||| || || |
|
|
| T |
16632538 |
gacaattacgactaaagtaatttgctcctaattaatagtttcaaatatcacaacagatgcacatttgagaatcatgtacaaattgatctagcattaatgg |
16632637 |
T |
|
| Q |
102 |
ttgttctaaacaaaattattcatgaaatgcaacttgaggactttgatattaaggcagaaaagaatggacacggtcaactaaaacaca |
188 |
Q |
| |
|
|||| | |||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
16632638 |
ttgtcccaaacaaaattattcataaaaggcaacttgaggactttgatcttaacgcagaaaagaatggacacagtcaactaaaacaca |
16632724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 11201204 - 11201112
Alignment:
| Q |
199 |
cttaaggattatctgcacaatcaaagtgcttagacattttagatcctgaggtagtaaacctcaaatatgttttgtccattgcatgtctgtgtt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11201204 |
cttaaggattatctgcacaatcaaagtgcttagacattttagatcctgatgtagtaaacctcaaatatgttttgtccattgcatgtctgtgtt |
11201112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 11162436 - 11162383
Alignment:
| Q |
238 |
tagatcctgaggtagtaaacctcaaatatgttttgtccattgcatgtctgtgtt |
291 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11162436 |
tagatcctgatgtagtaaacctcaaatatgttttgtccattgcatgtctgtgtt |
11162383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University