View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14398_high_17 (Length: 240)
Name: NF14398_high_17
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 54152160 - 54151954
Alignment:
| Q |
10 |
catcatcaacattattgtaatatgattcatcactagtggtagcctatagataacaaacaaggaaacttgaagatgtaaattttaagtattaattgcacaa |
109 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54152160 |
catcatcaacattattgtagtatgattcatcactagtggtagcctatagataacaaacaaggaaacttgaagatgtaaattttaagta-taattgcacaa |
54152062 |
T |
|
| Q |
110 |
gttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgattaatgttcaaagattgattgacaagcaattcaaatggtttgat |
209 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54152061 |
gttcaatattatttgcataaatttgtcactagaatatacattaatcctgaagatgattaatgt-------ttgattgacaagcaattcaaatggtttgat |
54151969 |
T |
|
| Q |
210 |
aaggtcggtactatt |
224 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
54151968 |
aaggtcggtactatt |
54151954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 54140840 - 54140739
Alignment:
| Q |
108 |
aagttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgattaatgttcaaagattgattgacaagcaattcaaatggtttg |
207 |
Q |
| |
|
||||||||| |||||||||||| ||| | |||| |||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
54140840 |
aagttcaatgttatttgcataaatttcttactaaaatatacattaatcttgaagatcattaatgttcaaaga----ttgacaaacaattcaaatggtttg |
54140745 |
T |
|
| Q |
208 |
ataagg |
213 |
Q |
| |
|
|||||| |
|
|
| T |
54140744 |
ataagg |
54140739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 54127820 - 54127753
Alignment:
| Q |
22 |
tattgtaatatgattcatcactagtggtagcctatagataacaaacaaggaaacttgaagatgtaaat |
89 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54127820 |
tattgtaatacgattcatcactaacggtagcctatagataacaaacagggaaacttgaagatgtaaat |
54127753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 54127711 - 54127642
Alignment:
| Q |
108 |
aagttcaatattatttgcataagtttttcactagaatatacattaatcctgaagatgattaatgttcaaa |
177 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||| || |||||| |
|
|
| T |
54127711 |
aagttcaatattatttgcataagtttcttactaacatatacattaatcttgaagatgattcatattcaaa |
54127642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 54140916 - 54140875
Alignment:
| Q |
48 |
gtagcctatagataacaaacaaggaaacttgaagatgtaaat |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54140916 |
gtagcctatagataacaaacaaggaaacttgaagatgtaaat |
54140875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University