View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14398_high_2 (Length: 602)

Name: NF14398_high_2
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14398_high_2
NF14398_high_2
[»] chr6 (4 HSPs)
chr6 (151-584)||(12702615-12703048)
chr6 (69-109)||(12703087-12703127)
chr6 (239-354)||(30613467-30613582)
chr6 (151-187)||(5493032-5493068)
[»] chr8 (5 HSPs)
chr8 (408-499)||(36591445-36591536)
chr8 (193-226)||(10794589-10794622)
chr8 (151-218)||(29005525-29005589)
chr8 (191-227)||(6629222-6629258)
chr8 (152-214)||(37955291-37955350)
[»] chr5 (5 HSPs)
chr5 (413-496)||(28903082-28903165)
chr5 (413-496)||(28939477-28939560)
chr5 (236-297)||(31966800-31966861)
chr5 (194-226)||(8544941-8544973)
chr5 (151-187)||(39178179-39178215)
[»] chr1 (7 HSPs)
chr1 (413-496)||(16657529-16657612)
chr1 (151-218)||(40368053-40368117)
chr1 (413-499)||(32794295-32794381)
chr1 (151-211)||(42560983-42561040)
chr1 (190-226)||(33218494-33218530)
chr1 (151-187)||(8723320-8723356)
chr1 (151-183)||(43603017-43603049)
[»] chr3 (5 HSPs)
chr3 (236-356)||(16239149-16239269)
chr3 (191-226)||(51283740-51283775)
chr3 (236-352)||(19925084-19925200)
chr3 (199-227)||(25150988-25151016)
chr3 (151-187)||(51940384-51940420)
[»] scaffold0728 (2 HSPs)
scaffold0728 (413-513)||(2044-2147)
scaffold0728 (413-513)||(6984-7087)
[»] chr4 (8 HSPs)
chr4 (409-514)||(201385-201490)
chr4 (440-512)||(14856134-14856206)
chr4 (191-226)||(46250833-46250868)
chr4 (191-221)||(5105645-5105675)
chr4 (151-218)||(28915576-28915640)
chr4 (151-187)||(10214373-10214409)
chr4 (191-227)||(25156565-25156601)
chr4 (151-187)||(38940666-38940702)
[»] chr2 (10 HSPs)
chr2 (151-218)||(744927-744991)
chr2 (416-513)||(20681506-20681603)
chr2 (191-226)||(29754601-29754636)
chr2 (191-232)||(12599590-12599631)
chr2 (481-514)||(35298197-35298230)
chr2 (151-217)||(23914561-23914624)
chr2 (155-187)||(29750427-29750459)
chr2 (151-187)||(31522755-31522791)
chr2 (151-187)||(31525242-31525278)
chr2 (151-187)||(45624750-45624786)
[»] chr7 (5 HSPs)
chr7 (151-217)||(5468066-5468129)
chr7 (191-226)||(10039920-10039955)
chr7 (151-217)||(7192318-7192384)
chr7 (432-514)||(31078167-31078249)
chr7 (355-396)||(30295813-30295854)
[»] scaffold0047 (1 HSPs)
scaffold0047 (191-222)||(65620-65651)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 151 - 584
Target Start/End: Complemental strand, 12703048 - 12702615
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaagataaatataatttactatataatggttgggtgtacat 250  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12703048 attataccctaaaataaatttttctataataatgttaacgtattgttagtattattgaaaaagataaatataatttactatataatggttgggtgtacat 12702949  T
Q  251 tcagcagactcatcaatcattgttgatcactttactcagtttggtactttgtcaggctttgcaaaatctcggtgctccattatatatttaatttggtttg 350  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12702948 tcagcagacccatcaaccattgttgatcactttactcagtttggtactttgtcaggctttgcaaaatctcggtgctccattatatatataatttggtttg 12702849  T
Q  351 caagtttggaaggaaaggaacgctagaatttttcgtggtaaagaaaaagtacatctattcaactcttggaaaatataaagtttctttctttttgatggta 450  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12702848 caagcttggaaggaaaggaacactagaatttttcgtggtaaagaaaaattacatctattaaactcttggaaaatataaagtttctttctttttgatggta 12702749  T
Q  451 taaagctcaatttatcgtttattattacaaatttcatgattggtgtcagaactcatttttatgtatgaagactggctaattgttttatttcccaccgaga 550  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12702748 taaagctcaatttatcgtttattattacaaattttatgattggtatcagaactcatttttatgtatgaagactggctaattgttttatttccgaccgaga 12702649  T
Q  551 ctctttagtaattattggctatccttttcggtac 584  Q
    ||||||||||||||||||||||||||||||||||    
T  12702648 ctctttagtaattattggctatccttttcggtac 12702615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 12703127 - 12703087
Alignment:
Q  69 atagaaagattatttagcataattatgtaacgaaaatatgg 109  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  12703127 atagaaagattatttagcataattatgtaacgagaatatgg 12703087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 30613582 - 30613467
Alignment:
Q  239 ttgggtgtacattcagcagactcatcaatcattgttgatcactttactcagtttggtactttgtcaggctttgcaaaatctcggtgctccattatatatt 338  Q
    |||||||| |||||||||||  | |||| ||| || || |||||||||||||||| |||||  |||    |||||||||| || || ||  ||||| |||    
T  30613582 ttgggtgttcattcagcagagccctcaaccatagtcgaccactttactcagtttgttacttcatcatttcttgcaaaatcgcgttgttcttttataaatt 30613483  T
Q  339 taatttggtttgcaag 354  Q
    ||||||||||||||||    
T  30613482 taatttggtttgcaag 30613467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 5493068 - 5493032
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    |||||||||||||| |||||| |||||||||||||||    
T  5493068 attatacccttaaacaaatttttctataataatgtta 5493032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 499
Target Start/End: Original strand, 36591445 - 36591536
Alignment:
Q  408 ttcaactcttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgtcag 499  Q
    ||||||||||||||||||| ||| |||| ||   ||||||||||||||| |||||| | |||||| |||  || ||||||||||||||||||    
T  36591445 ttcaactcttggaaaatatcaagcttctctccacttgatggtataaagcgcaatttgttgtttatcattttaattttcatgattggtgtcag 36591536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 10794622 - 10794589
Alignment:
Q  193 ttgttggtatcattgaaaaagataaatataattt 226  Q
    ||||||||||||||||||||||||| ||||||||    
T  10794622 ttgttggtatcattgaaaaagataagtataattt 10794589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 29005525 - 29005589
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaagataaa 218  Q
    |||||||  ||||| |||||| ||||||||| |||||   ||||||||||||||||||||| ||||||    
T  29005525 attatactgttaaacaaatttttctataatattgtta---tattgttggtatcattgaaaaggataaa 29005589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 6629222 - 6629258
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatataattta 227  Q
    |||||||||| |||||||| |||||||||||||||||    
T  6629222 tattgttggtgtcattgaataagataaatataattta 6629258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 37955350 - 37955291
Alignment:
Q  152 ttatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaaga 214  Q
    |||||||||||||||| |||  ||||||||||||||   || ||||||| |||||||||||||    
T  37955350 ttatacccttaaataatttttcctataataatgtta---taatgttggtgtcattgaaaaaga 37955291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 496
Target Start/End: Original strand, 28903082 - 28903165
Alignment:
Q  413 ctcttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgt 496  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||| |||||| | |||||  |||  ||||||||||| ||||||    
T  28903082 ctcttggaaaatataaagcttctttctttttggtggtacaaagcgcaatttgttgtttaccattttaaatttcatgactggtgt 28903165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 496
Target Start/End: Original strand, 28939477 - 28939560
Alignment:
Q  413 ctcttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgt 496  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||| |||||| | |||||  |||  ||||||||||| ||||||    
T  28939477 ctcttggaaaatataaagcttctttctttttggtggtacaaagcgcaatttgttgtttaccattttaaatttcatgactggtgt 28939560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 31966861 - 31966800
Alignment:
Q  236 tggttgggtgtacattcagcagactcatcaatcattgttgatcactttactcagtttggtac 297  Q
    ||||||||||| |||||||||||| | |||  |||||| || ||||||| ||||||||||||    
T  31966861 tggttgggtgttcattcagcagacccctcacccattgtggaccactttattcagtttggtac 31966800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 8544941 - 8544973
Alignment:
Q  194 tgttggtatcattgaaaaagataaatataattt 226  Q
    ||||| |||||||||||||||||||||||||||    
T  8544941 tgttgttatcattgaaaaagataaatataattt 8544973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 39178215 - 39178179
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    |||||||||||||||||||||  ||||||||||||||    
T  39178215 attatacccttaaataaattttcctataataatgtta 39178179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 413 - 496
Target Start/End: Original strand, 16657529 - 16657612
Alignment:
Q  413 ctcttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgt 496  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||| |||||| | |||||  |||  ||||||||||| ||||||    
T  16657529 ctcttggaaaatataaagcttctttctttttggtggtacaaagcgcaatttgttgtttaccattttaaatttcatgactggtgt 16657612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 40368053 - 40368117
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaagataaa 218  Q
    |||||||||||||| |||||| |||||| ||||||||   |||||||||| |||||||||||||||||    
T  40368053 attatacccttaaacaaatttttctatattaatgtta---tattgttggtgtcattgaaaaagataaa 40368117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 499
Target Start/End: Original strand, 32794295 - 32794381
Alignment:
Q  413 ctcttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgtcag 499  Q
    |||||| ||||||| ||| ||||||| ||||| ||||||||||| |||||| | |||||| |||  ||||| |||||||||| ||||    
T  32794295 ctcttgaaaaatatcaagcttctttccttttggtggtataaagcgcaatttgttgtttatcattttaaattccatgattggtatcag 32794381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 42561040 - 42560983
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaa 211  Q
    |||||||||||||| |||||| |||||||||||||||   |||||||||| ||||||||||    
T  42561040 attatacccttaaacaaatttttctataataatgtta---tattgttggtgtcattgaaaa 42560983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 33218494 - 33218530
Alignment:
Q  190 gtattgttggtatcattgaaaaagataaatataattt 226  Q
    |||||||||||||||||||||||||||| ||||||||    
T  33218494 gtattgttggtatcattgaaaaagataagtataattt 33218530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 8723356 - 8723320
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    |||||||||||||||||||||| |||||| |||||||    
T  8723356 attatacccttaaataaatttgactataagaatgtta 8723320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 43603017 - 43603049
Alignment:
Q  151 attatacccttaaataaatttgtctataataat 183  Q
    |||||||||||||| ||||||||||||||||||    
T  43603017 attatacccttaaacaaatttgtctataataat 43603049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 356
Target Start/End: Original strand, 16239149 - 16239269
Alignment:
Q  236 tggttgggtgtacattcagcagactcatcaatcattgttgatcactttactcagtttggtactttgtcaggctttgcaaaatctcggtgctccattatat 335  Q
    ||||||||||| ||| | |||||| | | || ||| ||||| ||||||| ||||||||||||||  |||||  |||||||||| ||||| ||  |||| |    
T  16239149 tggttgggtgttcatcctgcagaccctttaaccatcgttgaccactttattcagtttggtacttcttcaggtcttgcaaaatcgcggtgttcttttatgt 16239248  T
Q  336 atttaatttggtttgcaagtt 356  Q
    || | ||||||||||||||||    
T  16239249 atctcatttggtttgcaagtt 16239269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Original strand, 51283740 - 51283775
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatataattt 226  Q
    ||||||||||||||||||||||||||| ||||||||    
T  51283740 tattgttggtatcattgaaaaagataagtataattt 51283775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 19925200 - 19925084
Alignment:
Q  236 tggttgggtgtacattcagcagactcatcaatcattgttgatcactttactcagtttggtactttgtcaggctttgcaaaatctcggtgctccattatat 335  Q
    ||||||||||| |||||| ||||  | |||| |||||| ||||| |||  ||||||||||||||  |||||  || ||||||| | ||| ||  |||| |    
T  19925200 tggttgggtgttcattcaacagatccctcaaccattgtggatcattttcttcagtttggtacttcctcaggtcttccaaaatcacagtgttcttttatgt 19925101  T
Q  336 atttaatttggtttgca 352  Q
    ||||||| |||||||||    
T  19925100 atttaatatggtttgca 19925084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 227
Target Start/End: Original strand, 25150988 - 25151016
Alignment:
Q  199 gtatcattgaaaaagataaatataattta 227  Q
    |||||||||||||||||||||||||||||    
T  25150988 gtatcattgaaaaagataaatataattta 25151016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 51940384 - 51940420
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  51940384 attatacccttaaataaatttgtttataagaatgtta 51940420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 513
Target Start/End: Original strand, 2044 - 2147
Alignment:
Q  413 ctcttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatt---tcatgattggtgtcagaactcatttt 509  Q
    ||||| ||||| || ||| ||||||||||||| || |||||||| |||||| | |||||| |||| || ||   | ||||||||||||||||| ||||||    
T  2044 ctcttagaaaacatcaagcttctttctttttggtgatataaagcacaattttttgtttatcattataattttaataatgattggtgtcagaacccatttt 2143  T
Q  510 tatg 513  Q
    ||||    
T  2144 tatg 2147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 413 - 513
Target Start/End: Original strand, 6984 - 7087
Alignment:
Q  413 ctcttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatt---tcatgattggtgtcagaactcatttt 509  Q
    ||||| ||||| || ||| ||||||||||||| || |||||||| |||||| | |||||| |||| || ||   | ||||||||||||||||| ||||||    
T  6984 ctcttagaaaacatcaagcttctttctttttggtgatataaagcacaattttttgtttatcattataattttaataatgattggtgtcagaacccatttt 7083  T
Q  510 tatg 513  Q
    ||||    
T  7084 tatg 7087  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 409 - 514
Target Start/End: Complemental strand, 201490 - 201385
Alignment:
Q  409 tcaactcttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgtcagaactcattt 508  Q
    |||||| ||| ||||||| ||| || |||||||||| ||||| ||| | |||||| |||||||| |||| || ||| | || |||||| ||||| |||||    
T  201490 tcaacttttgaaaaatatcaagcttatttctttttggtggtacaaatcacaatttgtcgtttataattataagttttacgaatggtgttagaacccattt 201391  T
Q  509 ttatgt 514  Q
    ||||||    
T  201390 ttatgt 201385  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 512
Target Start/End: Original strand, 14856134 - 14856206
Alignment:
Q  440 ttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgtcagaactcatttttat 512  Q
    ||||| |||| ||||||||||||| | | |||| | || |||||| ||||||||||||||||| |||||||||    
T  14856134 ttttggtggtttaaagctcaatttttggcttatcactataaattttatgattggtgtcagaacccatttttat 14856206  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 46250868 - 46250833
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatataattt 226  Q
    ||||||||||||||||||||||||||| ||||||||    
T  46250868 tattgttggtatcattgaaaaagataagtataattt 46250833  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 5105675 - 5105645
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatat 221  Q
    |||||||||||||||||||||||||||||||    
T  5105675 tattgttggtatcattgaaaaagataaatat 5105645  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Original strand, 28915576 - 28915640
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaagataaa 218  Q
    ||||||| |||||| |||||| | |||||||||||||   |||| ||| |||||||||||||||||||    
T  28915576 attatactcttaaacaaatttttttataataatgtta---tattattgatatcattgaaaaagataaa 28915640  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 10214409 - 10214373
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    |||||||||||||||||||||| |||||| |||||||    
T  10214409 attatacccttaaataaatttgactataagaatgtta 10214373  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 25156601 - 25156565
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatataattta 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  25156601 tattgttggtatcattgaaaaagatacatatagttta 25156565  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 38940702 - 38940666
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  38940702 attatactcttaaataaatttgtctataaaaatgtta 38940666  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 744991 - 744927
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaagataaa 218  Q
    ||||||| ||||||||||||||||||||| |||||||   |||||||||| | ||| |||||||||||    
T  744991 attatactcttaaataaatttgtctataagaatgtta---tattgttggtgttatttaaaaagataaa 744927  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 513
Target Start/End: Complemental strand, 20681603 - 20681506
Alignment:
Q  416 ttggaaaatataaagtttctttctttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgtcagaactcatttttatg 513  Q
    ||||||||||| ||| ||||||  ||||| |||| ||||||||| ||| |   || | |||| |||||| |||||||||||| |||||||||||||||    
T  20681603 ttggaaaatatcaagcttcttttcttttggtggtttaaagctcattttgttacttttcattataaattttatgattggtgtcggaactcatttttatg 20681506  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 29754636 - 29754601
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatataattt 226  Q
    ||||||||||||||||||||||||||| ||||||||    
T  29754636 tattgttggtatcattgaaaaagataagtataattt 29754601  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 12599590 - 12599631
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatataatttactata 232  Q
    |||| ||||||| |||||||||||||||||||||||| ||||    
T  12599590 tattattggtataattgaaaaagataaatataatttattata 12599631  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 514
Target Start/End: Complemental strand, 35298230 - 35298197
Alignment:
Q  481 atttcatgattggtgtcagaactcatttttatgt 514  Q
    ||||||||||||||| ||||||||||||||||||    
T  35298230 atttcatgattggtgccagaactcatttttatgt 35298197  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 23914561 - 23914624
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaagataa 217  Q
    |||||||||||||| ||||||| |||||| |||||||   ||||||| || | ||||||||||||||    
T  23914561 attatacccttaaacaaatttggctataagaatgtta---tattgtttgtgttattgaaaaagataa 23914624  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 29750459 - 29750427
Alignment:
Q  155 tacccttaaataaatttgtctataataatgtta 187  Q
    |||||||||||||||||| ||||||||||||||    
T  29750459 tacccttaaataaatttgcctataataatgtta 29750427  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 31522755 - 31522791
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  31522755 attatacccttaaacaaatttgtctatattaatgtta 31522791  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 31525242 - 31525278
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  31525242 attatacccttaaataaatttttctatattaatgtta 31525278  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 45624750 - 45624786
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgtta 187  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  45624750 attatatccttaaacaaatttgtctataataatgtta 45624786  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 5468066 - 5468129
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaagataa 217  Q
    ||||||||| ||||||||||| |||||||||||||||   |||| ||| | ||||||||||||||||    
T  5468066 attatacccgtaaataaatttttctataataatgtta---tattattgatgtcattgaaaaagataa 5468129  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 10039955 - 10039920
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatataattt 226  Q
    |||||||||| |||||||||||||||||||||||||    
T  10039955 tattgttggtgtcattgaaaaagataaatataattt 10039920  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 7192384 - 7192318
Alignment:
Q  151 attatacccttaaataaatttgtctataataatgttaacgtattgttggtatcattgaaaaagataa 217  Q
    |||||||||||||||||||||| |||||| ||||||||  | ||||| || | ||| ||||||||||    
T  7192384 attatacccttaaataaatttgactataagaatgttaattttttgtttgtgttatttaaaaagataa 7192318  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 514
Target Start/End: Complemental strand, 31078249 - 31078167
Alignment:
Q  432 ttctttctttttgatggtataaagctcaatttatcgtttattattacaaatttcatgattggtgtcagaactcatttttatgt 514  Q
    ||||||| |||||||||||||| ||||||||| | | |||| |||| ||||||||| | || |||| |||  |||||||||||    
T  31078249 ttctttccttttgatggtataaggctcaatttgtggcttatcattataaatttcataaatgatgtcggaatccatttttatgt 31078167  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 30295813 - 30295854
Alignment:
Q  355 tttggaaggaaaggaacgctagaatttttcgtggtaaagaaa 396  Q
    |||||||||||| ||| |||||||||||||||| ||||||||    
T  30295813 tttggaaggaaatgaatgctagaatttttcgtgctaaagaaa 30295854  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 222
Target Start/End: Original strand, 65620 - 65651
Alignment:
Q  191 tattgttggtatcattgaaaaagataaatata 222  Q
    ||||||||||||||||||||||||||||||||    
T  65620 tattgttggtatcattgaaaaagataaatata 65651  T

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