View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14398_high_21 (Length: 217)
Name: NF14398_high_21
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 24900628 - 24900815
Alignment:
| Q |
19 |
atattgacccttggctgaagttttaaagtctagttggcagactataattagcctgagttattttggcagggcagcatttatgcaattgtcactttctctt |
118 |
Q |
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| T |
24900628 |
atatttacccttggctgaagttttaaagtctagttggcagactataattagcctgagttattttggcagggcagcatttatgcaattgtcactttctctt |
24900727 |
T |
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| Q |
119 |
gaatcaatattcttctaatatatgtggttcatgttataggtttgggggatggttgcaacatttgttgaatatcatgtcctttgctact |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24900728 |
gaatcaatattcttctaatatatgtggttcatgttataggtttgggggatggttgcaacatttgttgaatatcatgtcctttggtact |
24900815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 24909774 - 24909895
Alignment:
| Q |
19 |
atattgacccttggctgaagttttaaagtctagttggcagactataa------ttagcctgagttattttggcagggcagcatttatgcaattgtcactt |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| || | |||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
24909774 |
atattgacccttagctgaagttttaaagtctagttggcagttgattaggcacattagcctgagttgctttggcaggccagcatttatgcaattgtcactt |
24909873 |
T |
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| Q |
113 |
tctcttgaatcaatattcttct |
134 |
Q |
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| T |
24909874 |
tctcttgaatcagtattcttct |
24909895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 24884154 - 24884095
Alignment:
| Q |
65 |
attagcctgagttattttggcagggcagcatttatgcaattgtcactttctcttgaatca |
124 |
Q |
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| T |
24884154 |
attagcctgagttgttttggcaggtcagcatttatgcaattgtcactttctcttgaatca |
24884095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 24883989 - 24883951
Alignment:
| Q |
153 |
tataggtttgggggatggttgcaacatttgttgaatatc |
191 |
Q |
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| T |
24883989 |
tataggtttgggggctggttgcaacatttgttgaatatc |
24883951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 134
Target Start/End: Complemental strand, 25736315 - 25736276
Alignment:
| Q |
95 |
tttatgcaattgtcactttctcttgaatcaatattcttct |
134 |
Q |
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|||||||||||||||||||||||||||||| |||| |||| |
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| T |
25736315 |
tttatgcaattgtcactttctcttgaatcagtatttttct |
25736276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 25736245 - 25736190
Alignment:
| Q |
139 |
tatgtggttcatgttataggtttgggggatggtt--gcaacatttgttgaatatca |
192 |
Q |
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||||||||||||||||| |||||||||| ||||| | ||||||||||||||||| |
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| T |
25736245 |
tatgtggttcatgttattggtttgggggctggttaggatacatttgttgaatatca |
25736190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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