View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14398_high_3 (Length: 576)
Name: NF14398_high_3
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 333338 - 332779
Alignment:
| Q |
1 |
actcaaaaatctcatcacaagaaacagaaaaaaccacaaaacctgaatgtccttcactcactataacaccaacatgcacaaaaaaccctccatcattagc |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
333338 |
actcaaaaatctcatcgcaagaaacagaaaaaaccacaaaatctgaatgtccttcactccctataacaccaacatgcacaaaaaaccctccatcattagc |
333239 |
T |
|
| Q |
101 |
caatgcattaatccattatgcaacaacaaaaatcacccctcaacaaacaattcaagagatctcagtctcagccaaagttcttcnnnnnnnntcaccttgc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
333238 |
caatgcattaatccattatgcaacaacaaaaatcacccctcaacaaacaattcaagagatctcagtctcagccaaagttcttcaaaaaaaatcaccttgc |
333139 |
T |
|
| Q |
201 |
aacttcttggtctttggattaggtcatgatagtctcatgtggacatcattaaactacggcggccggatcgtttttcttgtagaagacaagacatggattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |
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| T |
333138 |
aacttcttggtctttggattaggtcatgatagtctcatgtggacatcattaaactacggcggccggaccgttttccttgaagaagacaagacatggattg |
333039 |
T |
|
| Q |
301 |
agcaaatccaatcaaagttcccaacggtggaatcatatcatgttgtgtatgatacaaaagtacatcaaagtgatgaactaatgaaaattggaatggaaca |
400 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
333038 |
agcaaatccaatcaaagttcccaacgttggaatcatatcatgttgtgtatgatacaaaagtacatcaaagtgatgaactaatgaaaattggaatggaaca |
332939 |
T |
|
| Q |
401 |
agaggattgcaaaaaggtttctgacccaagattttcaaaatgtggattagcacttaaaggatttccaagtgaaatttatgatgtggaatgggatgtgatc |
500 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
332938 |
agaggattgcaaaaaagtttctgacccaagattttcaaaatgtggattagcacttaaaggatttccaagtgaaatttatgatgtggaatgggatgtgatc |
332839 |
T |
|
| Q |
501 |
atggtggatgcaccaacggggtacttcgatggcgcgccggggaggatgagtgctatttat |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
332838 |
atggtggatgcaccaacggggtacttcgatggcgcgccggggaggatgagtgctatttat |
332779 |
T |
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