View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14398_high_8 (Length: 351)
Name: NF14398_high_8
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 40878836 - 40879154
Alignment:
| Q |
17 |
tacgatgtccttagaattaagggaagcttaaaaaccggcaacgctggcgtggcagtatgttttgcacaaaacaacaaatggtttt-tctctctatagaag |
115 |
Q |
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| T |
40878836 |
tacgatgtccttagaattaagggaagcttaaaaaccggcaacgctggcgtggcagtatgttttgcaaaaaacaacaaatggttttttctctctatagtag |
40878935 |
T |
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| Q |
116 |
attttgaatattattggtttctttttgtcacactataaataaataaacaccagcaacagaaggacacacaatttgtttgatcaacaatacagtacagaac |
215 |
Q |
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| T |
40878936 |
attttgaatatcattggtttgtttttgtcacactataaataaataaacaccaacaacagaaggacacacaatttgtttgatcaacaatacagtacagaac |
40879035 |
T |
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| Q |
216 |
tttctaaacaattctcaattgtttcttgcaatcttcatccgttgattttcttaagtcatgtcgagtacagctggtcaagtcatcaaatgcaaaggtatga |
315 |
Q |
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| T |
40879036 |
tttctaaacaattctcaattgtttcttgcaatcttcatccgttgattttcttaagtcatgtcgagtacagctggtcaagtcatcaaatgcaaaggtatga |
40879135 |
T |
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| Q |
316 |
gccctgaattcattggatc |
334 |
Q |
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||||||||||||||||||| |
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| T |
40879136 |
gccctgaattcattggatc |
40879154 |
T |
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