View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14398_low_10 (Length: 331)
Name: NF14398_low_10
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 55 - 331
Target Start/End: Original strand, 49989067 - 49989341
Alignment:
| Q |
55 |
aatagaacttgttaatctcaatattaaaatgtcttacatgannnnnnnnaatagaacttgttaaaaatgctaacaatgaaactgacttggtatgcaattt |
154 |
Q |
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| T |
49989067 |
aatagaacttgttaatctcaatattaaaatgtcttacatgattttttttaatagaacttgttaaaaatgctaacattgaaactgacttggtatgcaattt |
49989166 |
T |
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| Q |
155 |
aagttgtaggagattgttt-actgcgtgtaattttgtgcttttagtagtgtagtgaatctagaggtgtgttcttcactgattttccccactctcacataa |
253 |
Q |
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| T |
49989167 |
aagttgtaggagattgttttactacgtgtaattttgtgcttttagtagtgtagtgaatct---ggtgtgttcttcactgattttccccactttcacataa |
49989263 |
T |
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| Q |
254 |
tgcttcaaggaatgtggtgacttgaacactcaaggaattcaatgctataaaatgggcacttattattgtgaagaaaat |
331 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49989264 |
tgcttcaaggaatgtggtgacttgaaaactcaaggaattcaatgctataaaatgggcacttattattgtgaagaaaat |
49989341 |
T |
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