View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14398_low_11 (Length: 309)
Name: NF14398_low_11
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 136 - 293
Target Start/End: Original strand, 1823573 - 1823730
Alignment:
| Q |
136 |
taaggagaatgaactctaagaggccaagagatatccaaatggataaactacaaatccaaagcacaaaaggaaaaccgatacacacattacttatggttaa |
235 |
Q |
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| T |
1823573 |
taaggagaatgaactctaagaggccaagagatatccaaatggataaactacaaatccaaagcacaaaaggaaaactgataaacacattacttatggttaa |
1823672 |
T |
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| Q |
236 |
tacgtaccaaaccctaagtaaatagattcaaactaattagaaatataaaagtacaatg |
293 |
Q |
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| T |
1823673 |
tacgtaccaaaccctaagtaaatagattcaaaataattagaaatataaaagtacaatg |
1823730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 1823442 - 1823505
Alignment:
| Q |
5 |
aagtaacaaatgtaacaataaaatcctttaacaacctctcaagagttgtgcattttccaagtat |
68 |
Q |
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| T |
1823442 |
aagtaacaaatgtaacaataaaatcctttaacaatctctcaagagttgtgcattttccaagtat |
1823505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 136 - 293
Target Start/End: Original strand, 52276900 - 52277065
Alignment:
| Q |
136 |
taaggagaatgaactctaagaggccaagagatatccaaatggataaactacaaatccaaagc------------acaaaaggaaaaccgatacacacatt |
223 |
Q |
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| T |
52276900 |
taaggataatgaactctaagaggccaagagatatccaaatggttaaactacaaatccaaagcaattttgacttgacaaaaggaaaactgatacacgtatt |
52276999 |
T |
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| Q |
224 |
acttatggttaatacgtaccaaaccctaagtaaatagattcaaactaattagaaatataaaagtacaatg |
293 |
Q |
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| T |
52277000 |
acttatggttaa----tacaaaaccctaagcaaatagatttaaactaattagaaatataaaagtataatg |
52277065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 52276793 - 52276856
Alignment:
| Q |
5 |
aagtaacaaatgtaacaataaaatcctttaacaacctctcaagagttgtgcattttccaagtat |
68 |
Q |
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| T |
52276793 |
aagtaacaaatgtaacaataaaatcctttaacaacctctcaagagttgtgcattatccaagtat |
52276856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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