View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14398_low_14 (Length: 290)
Name: NF14398_low_14
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 6315078 - 6315347
Alignment:
| Q |
1 |
aactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttggaatatgcctggcaacaatccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315078 |
aactgcacaacaatgattatgaatggtttaactatggtgttgtggaatatatggaagagaagaagtaagcagctttggaatatgcctggcaacaatccaa |
6315177 |
T |
|
| Q |
101 |
caagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttggagattaacacgaggcatatagtagatggaaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315178 |
caagctatttagttccctgttgttttgaaatggcaaaagaaaaagcagcaaaatacttagaatttggagattaacacgaggcatatagtagatggaaaag |
6315277 |
T |
|
| Q |
201 |
accacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315278 |
accacaacaggggtacttgtcatatggcaacaggtggattagtagcaacggagacttgttgggcagatgg |
6315347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University