View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14398_low_16 (Length: 277)

Name: NF14398_low_16
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14398_low_16
NF14398_low_16
[»] chr3 (15 HSPs)
chr3 (75-261)||(23399010-23399195)
chr3 (75-261)||(23427409-23427586)
chr3 (8-53)||(16231845-16231890)
chr3 (10-58)||(15085632-15085680)
chr3 (10-53)||(40739164-40739207)
chr3 (7-58)||(46767414-46767465)
chr3 (8-58)||(27329880-27329930)
chr3 (8-50)||(29559630-29559672)
chr3 (8-58)||(36472379-36472429)
chr3 (9-59)||(49028890-49028940)
chr3 (8-58)||(51879167-51879217)
chr3 (8-49)||(25883945-25883986)
chr3 (9-49)||(39709111-39709151)
chr3 (10-58)||(41253697-41253745)
chr3 (10-58)||(41710657-41710705)
[»] chr8 (12 HSPs)
chr8 (8-58)||(8183392-8183442)
chr8 (8-54)||(34873158-34873204)
chr8 (7-58)||(37708762-37708813)
chr8 (7-53)||(24517366-24517412)
chr8 (8-58)||(36035127-36035177)
chr8 (8-58)||(44053388-44053438)
chr8 (8-53)||(29170837-29170882)
chr8 (8-49)||(31024366-31024407)
chr8 (9-50)||(32630318-32630359)
chr8 (8-53)||(42801602-42801647)
chr8 (8-48)||(33810712-33810752)
chr8 (10-58)||(40904605-40904653)
[»] chr6 (5 HSPs)
chr6 (8-58)||(18904337-18904387)
chr6 (8-58)||(32141984-32142034)
chr6 (8-38)||(17317465-17317495)
chr6 (8-58)||(32621530-32621580)
chr6 (8-48)||(361235-361275)
[»] chr2 (8 HSPs)
chr2 (9-59)||(14518357-14518407)
chr2 (9-58)||(7717553-7717602)
chr2 (8-58)||(15939361-15939411)
chr2 (11-48)||(11268364-11268401)
chr2 (8-53)||(33587161-33587206)
chr2 (8-53)||(34125817-34125862)
chr2 (9-49)||(18862325-18862365)
chr2 (9-53)||(39635373-39635417)
[»] chr1 (5 HSPs)
chr1 (8-58)||(18512523-18512573)
chr1 (8-53)||(22592534-22592579)
chr1 (10-53)||(5863046-5863089)
chr1 (9-53)||(43884867-43884911)
chr1 (9-53)||(52369670-52369714)
[»] chr5 (9 HSPs)
chr5 (8-53)||(6734692-6734737)
chr5 (10-53)||(885111-885154)
chr5 (8-51)||(38097345-38097388)
chr5 (8-58)||(3741026-3741076)
chr5 (8-58)||(3821369-3821419)
chr5 (8-58)||(30208949-30208999)
chr5 (8-54)||(39799982-39800028)
chr5 (9-58)||(13958455-13958504)
chr5 (8-53)||(33372955-33373000)
[»] chr4 (7 HSPs)
chr4 (11-52)||(32898512-32898553)
chr4 (8-58)||(36099131-36099181)
chr4 (8-58)||(45303932-45303982)
chr4 (9-58)||(28715763-28715812)
chr4 (8-49)||(47929317-47929358)
chr4 (8-53)||(56087907-56087952)
chr4 (10-58)||(30305873-30305921)
[»] chr7 (4 HSPs)
chr7 (8-53)||(34891278-34891325)
chr7 (7-38)||(28735194-28735225)
chr7 (9-58)||(40200789-40200838)
chr7 (9-53)||(21576932-21576975)
[»] scaffold0264 (1 HSPs)
scaffold0264 (7-36)||(13456-13485)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 75 - 261
Target Start/End: Original strand, 23399010 - 23399195
Alignment:
Q  75 aatcaattgtatgatggaaagtacagatttaaaaattgtgtgaatagtgtatgcagggcagggtacaagcatatgatgacttcgatggttcatttttcaa 174  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  23399010 aatcaattgtatgatggatagtgcagatataaaaattgtgtgaatagtgtatgcagggcagggtacaagcatatgatgacttcgatggttcatttctcag 23399109  T
Q  175 aataattgggcctgtttattttnnnnnnnnttattctttttagtgtcggttttctaaaatttatgttcattttctaatctaagatgc 261  Q
    ||||||||||||||||||||||        ||||| |||| | |||  |||| ||||||||||||||||||| | ||||||||||||    
T  23399110 aataattgggcctgtttatttttaaaaaaattatt-ttttcattgttcgtttcctaaaatttatgttcatttccaaatctaagatgc 23399195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 75 - 261
Target Start/End: Original strand, 23427409 - 23427586
Alignment:
Q  75 aatcaattgtatgatggaaagtacagatttaaaaattgtgtgaatagtgtatgcagggcagggtacaagcatatgatgacttcgatggttcatttttcaa 174  Q
    ||||||||||| |||||||||||||||||||||||||||||||||         || |||||||||||| |||||||||||| ||| |||||||| ||||    
T  23427409 aatcaattgtacgatggaaagtacagatttaaaaattgtgtgaat---------agagcagggtacaagtatatgatgacttggatagttcatttctcaa 23427499  T
Q  175 aataattgggcctgtttattttnnnnnnnnttattctttttagtgtcggttttctaaaatttatgttcattttctaatctaagatgc 261  Q
    ||||| | ||||||||||||||        ||||| ||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  23427500 aataagttggcctgtttattttaaaaaaaattattttttttagtgttcgttttctaaaatttatgttcatttcctaatctaagatgc 23427586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 16231890 - 16231845
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||||||||||||||||||| ||| || |||||||||||||    
T  16231890 cccacttctccatatttaaaatgtgcgagctccagccactagacta 16231845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 15085680 - 15085632
Alignment:
Q  10 cacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||||||||||||||||||||||| || ||||||||| ||| ||||    
T  15085680 cacttctccatatttaaaatgtgtgagctccagccactaggctacctga 15085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 40739207 - 40739164
Alignment:
Q  10 cacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||||| ||||||||||||||| || |||||||||||||    
T  40739207 cacttctccatgtttaaaatgtgtgagctctagccactagacta 40739164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 46767414 - 46767465
Alignment:
Q  7 tcccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  46767414 tcccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 46767465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 27329930 - 27329880
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  27329930 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 27329880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 29559672 - 29559630
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactaga 50  Q
    |||||||||||| ||||||||||||||||||| | ||||||||    
T  29559672 cccacttctccacatttaaaatgtgtgagttctatccactaga 29559630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 36472429 - 36472379
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| ||| |||||||||||| || ||||||||||||| ||||    
T  36472429 cccacttctccacattaaaaatgtgtgagctccagccactagactacctga 36472379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 49028940 - 49028890
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagactatctgat 59  Q
    ||||||||||| |||||||||| ||||| || | |||||||||||||||||    
T  49028940 ccacttctccacatttaaaatgcgtgagctccaaccactagactatctgat 49028890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 51879167 - 51879217
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  51879167 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 51879217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 25883986 - 25883945
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactag 49  Q
    |||||||||||| |||||||||||||||| || |||||||||    
T  25883986 cccacttctccacatttaaaatgtgtgagctccagccactag 25883945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 39709111 - 39709151
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactag 49  Q
    ||||||||||| |||||||||||||||| || |||||||||    
T  39709111 ccacttctccacatttaaaatgtgtgagctccagccactag 39709151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 41253745 - 41253697
Alignment:
Q  10 cacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||| ||||||||||||||||||||| || ||||||||| ||| ||||    
T  41253745 cacttttccatatttaaaatgtgtgagctccagccactaggctacctga 41253697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 41710657 - 41710705
Alignment:
Q  10 cacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  41710657 cacttctccacatttaaaatgtgtgagctccagccactaggctacctga 41710705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 8183392 - 8183442
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||||||||||||||||||||||||| || ||||| ||| ||||||||    
T  8183392 cccacttctccatatttaaaatgtgtgagctccagccattaggctatctga 8183442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 34873158 - 34873204
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactat 54  Q
    |||||||||||| |||||||||||||||| || ||||||||||||||    
T  34873158 cccacttctccacatttaaaatgtgtgagctccagccactagactat 34873204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 37708762 - 37708813
Alignment:
Q  7 tcccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  37708762 tcccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 37708813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 24517366 - 24517412
Alignment:
Q  7 tcccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    |||||||||| |||||||||||||||||||||  ||||| |||||||    
T  24517366 tcccacttctgcatatttaaaatgtgtgagtttcagccattagacta 24517412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 36035177 - 36035127
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  36035177 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 36035127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 44053438 - 44053388
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  44053438 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 44053388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 29170837 - 29170882
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    |||||||||||| | ||||| ||||||||||| |||||||||||||    
T  29170837 cccacttctccacaattaaattgtgtgagttctagccactagacta 29170882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 31024366 - 31024407
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactag 49  Q
    |||||||||||| |||||||||||||||| || |||||||||    
T  31024366 cccacttctccacatttaaaatgtgtgagctccagccactag 31024407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 32630318 - 32630359
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactaga 50  Q
    ||||||||||||||||| ||||||||||||| | ||||||||    
T  32630318 ccacttctccatatttataatgtgtgagttccaaccactaga 32630359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 42801647 - 42801602
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    |||||||||||||| ||||| ||||||||||| | |||||||||||    
T  42801647 cccacttctccataattaaattgtgtgagttctaaccactagacta 42801602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 33810712 - 33810752
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccacta 48  Q
    |||||||||||| |||||||||||||||| || ||||||||    
T  33810712 cccacttctccacatttaaaatgtgtgagctccagccacta 33810752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 40904605 - 40904653
Alignment:
Q  10 cacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||| |||||||||||| ||| |  ||||||||||||||||||    
T  40904605 cacttctccacatttaaaatgtgcgagcttcagccactagactatctga 40904653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 18904337 - 18904387
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||||||| ||||    
T  18904337 cccacttctccacatttaaaatgtgtgagctccagccactagactacctga 18904387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 32142034 - 32141984
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||| |||| |||||||||||||||| || ||||||||||||||||||    
T  32142034 cccacttttccacatttaaaatgtgtgagctccagccactagactatctga 32141984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 17317465 - 17317495
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagtt 38  Q
    |||||||||||||||||||||||||||||||    
T  17317465 cccacttctccatatttaaaatgtgtgagtt 17317495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 32621580 - 32621530
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  32621580 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 32621530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 361235 - 361275
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccacta 48  Q
    |||||||||||||||||||||| |||||| || ||||||||    
T  361235 cccacttctccatatttaaaatatgtgagctctagccacta 361275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 14518357 - 14518407
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagactatctgat 59  Q
    |||||||||||||||||||||||||||| || ||||||||| ||| |||||    
T  14518357 ccacttctccatatttaaaatgtgtgagctccagccactaggctacctgat 14518407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 7717602 - 7717553
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||||||| |||||||||||||||| ||  |||||||||||||||||    
T  7717602 ccacttctccacatttaaaatgtgtgagctccggccactagactatctga 7717553  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 15939361 - 15939411
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  15939361 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 15939411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 11268364 - 11268401
Alignment:
Q  11 acttctccatatttaaaatgtgtgagttcgagccacta 48  Q
    |||||||||||||||||||||||||| || ||||||||    
T  11268364 acttctccatatttaaaatgtgtgagctccagccacta 11268401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 33587161 - 33587206
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    |||||||||||||||||||||| |||||| || || ||||||||||    
T  33587161 cccacttctccatatttaaaatatgtgagctctagtcactagacta 33587206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 34125817 - 34125862
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    |||||||||||| ||||||||||||||||  | |||||||||||||    
T  34125817 cccacttctccacatttaaaatgtgtgagccctagccactagacta 34125862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 18862325 - 18862365
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactag 49  Q
    ||||||||||| |||||||||||||||| || |||||||||    
T  18862325 ccacttctccacatttaaaatgtgtgagctctagccactag 18862365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 39635373 - 39635417
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||||| |||||||||||||||  || |||||||||||||    
T  39635373 ccacttctccacatttaaaatgtgtgatctccagccactagacta 39635417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 18512573 - 18512523
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||||||| ||||    
T  18512573 cccacttctccacatttaaaatgtgtgagctccagccactagactacctga 18512523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 22592579 - 22592534
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||    
T  22592579 cccacttctccatatttaatatgtgtgagttctaaccactagacta 22592534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 5863046 - 5863089
Alignment:
Q  10 cacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||| |||||||||||||||||||| | |||||||||||    
T  5863046 cacttctccgtatttaaaatgtgtgagttctaaccactagacta 5863089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 43884867 - 43884911
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||||| | ||||| ||||||||||| |||||||||||||    
T  43884867 ccacttctccacaattaaattgtgtgagttctagccactagacta 43884911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 52369670 - 52369714
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||||||| ||||| |||||||| || |||||||||||||    
T  52369670 ccacttctccataattaaattgtgtgagctctagccactagacta 52369714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 6734737 - 6734692
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    |||||||||||| |||||||||||||||| || |||||||||||||    
T  6734737 cccacttctccacatttaaaatgtgtgagctccagccactagacta 6734692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 885154 - 885111
Alignment:
Q  10 cacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||||||||||||||||||||| || | |||||||||||    
T  885154 cacttctccatatttaaaatgtgtgagctccaaccactagacta 885111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 38097345 - 38097388
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagac 51  Q
    |||||||||||| |||||||||||||||| || |||||||||||    
T  38097345 cccacttctccacatttaaaatgtgtgagctctagccactagac 38097388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 3741026 - 3741076
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  3741026 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 3741076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 3821419 - 3821369
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  3821419 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 3821369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 30208999 - 30208949
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||||||||||||||||||||||||  || | ||| ||||||||||||    
T  30208999 cccacttctccatatttaaaatgtgtgatctccaaccagtagactatctga 30208949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 39800028 - 39799982
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactat 54  Q
    |||||||||||| |||||||||||||||| |  ||||||||||||||    
T  39800028 cccacttctccacatttaaaatgtgtgagcttcagccactagactat 39799982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 13958455 - 13958504
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||||||||| || || |||||||| || ||||||||||||||||||    
T  13958455 ccacttctccataatttaattgtgtgagctctagccactagactatctga 13958504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 33373000 - 33372955
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    |||||||||||| ||||||||||||| || || |||||||||||||    
T  33373000 cccacttctccacatttaaaatgtgtaagctccagccactagacta 33372955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 32898512 - 32898553
Alignment:
Q  11 acttctccatatttaaaatgtgtgagttcgagccactagact 52  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  32898512 acttctccatatttaaaatgtgtgagctccagccactagact 32898553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 36099181 - 36099131
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  36099181 cccacttctccacatttaaaatgtgtgagctccagccactaggctacctga 36099131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 45303982 - 45303932
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||| ||| ||||||||||||||| ||||||||| ||| ||||    
T  45303982 cccacttctccacattaaaaatgtgtgagttccagccactaggctacctga 45303932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 28715763 - 28715812
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    ||||||||||| |||||||||||||||| |  ||||||||||||| ||||    
T  28715763 ccacttctccacatttaaaatgtgtgagcttcagccactagactacctga 28715812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 47929317 - 47929358
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactag 49  Q
    |||||||||||| |||||||||||||||| || |||||||||    
T  47929317 cccacttctccacatttaaaatgtgtgagctctagccactag 47929358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 56087952 - 56087907
Alignment:
Q  8 cccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    |||||||||||| | ||||| ||||||||||| |||||||||||||    
T  56087952 cccacttctccacaattaaattgtgtgagttctagccactagacta 56087907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 30305873 - 30305921
Alignment:
Q  10 cacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||| |||||||||||||||| || ||||||||| ||| ||||    
T  30305873 cacttctccacatttaaaatgtgtgagctccagccactaggctacctga 30305921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 34891278 - 34891325
Alignment:
Q  8 cccacttctccatatttaaaa--tgtgtgagttcgagccactagacta 53  Q
    |||||||||||||||||||||  ||||||||||| |||||||||||||    
T  34891278 cccacttctccatatttaaaaaatgtgtgagttctagccactagacta 34891325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 28735225 - 28735194
Alignment:
Q  7 tcccacttctccatatttaaaatgtgtgagtt 38  Q
    ||||||||||||||||||||||||||||||||    
T  28735225 tcccacttctccatatttaaaatgtgtgagtt 28735194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 40200789 - 40200838
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagactatctga 58  Q
    |||||||||||||||||||||||||||| |  ||||||||| ||| ||||    
T  40200789 ccacttctccatatttaaaatgtgtgagcttcagccactaggctacctga 40200838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 21576932 - 21576975
Alignment:
Q  9 ccacttctccatatttaaaatgtgtgagttcgagccactagacta 53  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||    
T  21576932 ccacttctccatatttaat-tgtgtgagttcaagccactagacta 21576975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 13485 - 13456
Alignment:
Q  7 tcccacttctccatatttaaaatgtgtgag 36  Q
    ||||||||||||||||||||||||||||||    
T  13485 tcccacttctccatatttaaaatgtgtgag 13456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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