View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14398_low_20 (Length: 240)

Name: NF14398_low_20
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14398_low_20
NF14398_low_20
[»] chr3 (30 HSPs)
chr3 (13-115)||(4044906-4045008)
chr3 (107-228)||(4043921-4044041)
chr3 (170-228)||(3283328-3283386)
chr3 (184-228)||(11238712-11238756)
chr3 (170-214)||(34673400-34673444)
chr3 (170-214)||(34673462-34673506)
chr3 (170-214)||(34673524-34673568)
chr3 (174-228)||(19228609-19228663)
chr3 (170-228)||(19855510-19855568)
chr3 (170-228)||(41355459-41355517)
chr3 (174-228)||(54160434-54160488)
chr3 (170-228)||(4126019-4126077)
chr3 (174-228)||(8351098-8351152)
chr3 (174-228)||(20513091-20513145)
chr3 (170-228)||(21395917-21395975)
chr3 (170-228)||(35711884-35711942)
chr3 (170-228)||(38101245-38101303)
chr3 (174-228)||(45408292-45408346)
chr3 (170-228)||(52945615-52945673)
chr3 (174-228)||(54253855-54253909)
chr3 (170-211)||(6125833-6125874)
chr3 (170-214)||(27026693-27026737)
chr3 (170-214)||(27038039-27038083)
chr3 (174-228)||(13700310-13700364)
chr3 (170-224)||(35280458-35280512)
chr3 (170-212)||(39328474-39328516)
chr3 (170-228)||(54411848-54411906)
chr3 (79-124)||(4069580-4069625)
chr3 (183-228)||(9665355-9665400)
chr3 (170-211)||(36227854-36227895)
[»] chr1 (19 HSPs)
chr1 (14-115)||(13942041-13942142)
chr1 (170-228)||(1838714-1838772)
chr1 (170-220)||(15661132-15661182)
chr1 (170-228)||(17452949-17453007)
chr1 (174-228)||(25671034-25671088)
chr1 (170-220)||(30414155-30414205)
chr1 (174-228)||(42470802-42470856)
chr1 (174-228)||(43939509-43939563)
chr1 (170-226)||(7336111-7336167)
chr1 (170-228)||(2964915-2964973)
chr1 (170-228)||(8549615-8549673)
chr1 (174-228)||(14463365-14463419)
chr1 (174-220)||(24992922-24992968)
chr1 (170-228)||(1406755-1406813)
chr1 (170-228)||(1627728-1627785)
chr1 (174-228)||(10769826-10769880)
chr1 (174-228)||(26213756-26213810)
chr1 (175-211)||(30819571-30819607)
chr1 (170-214)||(47921620-47921664)
[»] chr5 (16 HSPs)
chr5 (170-228)||(23204422-23204480)
chr5 (170-228)||(16994194-16994252)
chr5 (170-224)||(26730359-26730413)
chr5 (170-228)||(19325093-19325151)
chr5 (170-228)||(28813113-28813171)
chr5 (173-228)||(28038262-28038317)
chr5 (173-228)||(37172450-37172505)
chr5 (170-228)||(9741771-9741829)
chr5 (170-228)||(17689394-17689451)
chr5 (170-223)||(18015693-18015746)
chr5 (170-220)||(19323755-19323805)
chr5 (174-228)||(20269279-20269333)
chr5 (170-228)||(27365761-27365819)
chr5 (170-211)||(16273620-16273661)
chr5 (170-219)||(31042578-31042627)
chr5 (170-228)||(19995324-19995379)
[»] chr4 (28 HSPs)
chr4 (170-228)||(27907035-27907093)
chr4 (170-228)||(42434285-42434343)
chr4 (170-228)||(6137305-6137363)
chr4 (170-228)||(19329405-19329463)
chr4 (171-228)||(13387029-13387086)
chr4 (170-228)||(13372417-13372475)
chr4 (170-228)||(13382618-13382676)
chr4 (170-228)||(32626118-32626176)
chr4 (170-228)||(32868030-32868088)
chr4 (170-228)||(34728276-34728334)
chr4 (170-228)||(38427125-38427183)
chr4 (174-228)||(51682619-51682673)
chr4 (170-227)||(40875258-40875315)
chr4 (170-214)||(40479906-40479950)
chr4 (170-220)||(5975709-5975759)
chr4 (170-228)||(6944616-6944674)
chr4 (170-228)||(20503478-20503536)
chr4 (174-228)||(51702502-51702556)
chr4 (170-228)||(52344539-52344597)
chr4 (170-211)||(47960351-47960392)
chr4 (183-228)||(52719105-52719150)
chr4 (170-226)||(34041248-34041304)
chr4 (170-228)||(11020404-11020462)
chr4 (170-228)||(20835752-20835810)
chr4 (174-224)||(28755437-28755487)
chr4 (174-220)||(32090023-32090069)
chr4 (170-211)||(43837746-43837787)
chr4 (170-228)||(48860782-48860837)
[»] chr2 (14 HSPs)
chr2 (170-228)||(10664741-10664799)
chr2 (169-228)||(12895374-12895433)
chr2 (170-228)||(1749968-1750026)
chr2 (170-224)||(24314264-24314318)
chr2 (170-228)||(42090460-42090518)
chr2 (172-228)||(9548262-9548318)
chr2 (170-228)||(12725767-12725825)
chr2 (170-228)||(18924589-18924647)
chr2 (170-228)||(21950685-21950743)
chr2 (170-228)||(29471684-29471742)
chr2 (170-228)||(39089153-39089211)
chr2 (170-214)||(2969698-2969742)
chr2 (173-214)||(16719780-16719821)
chr2 (170-219)||(44539893-44539942)
[»] chr7 (23 HSPs)
chr7 (172-228)||(35221719-35221775)
chr7 (170-228)||(41585931-41585989)
chr7 (170-228)||(45100016-45100074)
chr7 (172-228)||(3203345-3203401)
chr7 (170-224)||(5995105-5995159)
chr7 (170-228)||(21993515-21993573)
chr7 (174-226)||(31953206-31953258)
chr7 (170-228)||(3961222-3961280)
chr7 (170-228)||(35983152-35983210)
chr7 (170-228)||(36004564-36004622)
chr7 (170-228)||(41037170-41037228)
chr7 (170-228)||(41378423-41378481)
chr7 (170-220)||(46003784-46003834)
chr7 (170-228)||(48227283-48227341)
chr7 (170-211)||(27131059-27131100)
chr7 (170-207)||(26928017-26928054)
chr7 (170-211)||(38368222-38368263)
chr7 (170-211)||(48709087-48709128)
chr7 (174-214)||(12362888-12362928)
chr7 (174-214)||(27946879-27946919)
chr7 (188-224)||(36343052-36343088)
chr7 (170-214)||(42373510-42373554)
chr7 (170-214)||(43077545-43077589)
[»] chr8 (26 HSPs)
chr8 (170-228)||(10078350-10078408)
chr8 (174-228)||(22812379-22812433)
chr8 (170-228)||(26912375-26912433)
chr8 (170-228)||(33568121-33568179)
chr8 (170-228)||(39077336-39077394)
chr8 (170-224)||(19922560-19922614)
chr8 (170-224)||(28539213-28539267)
chr8 (170-228)||(44873958-44874016)
chr8 (170-228)||(254003-254061)
chr8 (170-228)||(661797-661855)
chr8 (170-228)||(5224345-5224402)
chr8 (174-228)||(9478757-9478811)
chr8 (170-228)||(16930857-16930915)
chr8 (170-228)||(23472559-23472617)
chr8 (170-228)||(31272827-31272885)
chr8 (170-228)||(38498303-38498361)
chr8 (170-224)||(42806261-42806315)
chr8 (185-228)||(28969168-28969211)
chr8 (170-228)||(847595-847653)
chr8 (174-228)||(9479460-9479514)
chr8 (170-228)||(12295219-12295277)
chr8 (174-228)||(14916719-14916773)
chr8 (174-228)||(41829576-41829630)
chr8 (183-228)||(30774171-30774216)
chr8 (170-214)||(1983531-1983575)
chr8 (174-214)||(40067609-40067649)
[»] scaffold0002 (2 HSPs)
scaffold0002 (170-228)||(94862-94919)
scaffold0002 (174-228)||(478355-478409)
[»] scaffold0001 (1 HSPs)
scaffold0001 (170-228)||(392451-392509)
[»] chr6 (10 HSPs)
chr6 (170-228)||(15081166-15081224)
chr6 (183-228)||(18096376-18096421)
chr6 (183-228)||(18102496-18102541)
chr6 (170-220)||(12159501-12159551)
chr6 (170-220)||(17347099-17347149)
chr6 (170-224)||(19104333-19104387)
chr6 (170-214)||(9891432-9891476)
chr6 (174-214)||(10075052-10075092)
chr6 (170-228)||(6322535-6322593)
chr6 (174-224)||(9533418-9533468)
[»] scaffold0246 (1 HSPs)
scaffold0246 (170-214)||(17845-17889)
[»] scaffold0168 (1 HSPs)
scaffold0168 (170-228)||(35099-35157)
[»] scaffold0004 (1 HSPs)
scaffold0004 (170-228)||(121686-121744)
[»] scaffold0006 (1 HSPs)
scaffold0006 (177-228)||(231189-231240)
[»] scaffold0093 (1 HSPs)
scaffold0093 (170-228)||(9197-9254)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 4045008 - 4044906
Alignment:
Q  13 tataaacaaatggaagtggttttgttagttttttaaatattgaatctcaaatttactattgcttagaatttattcgatattccttaactcaccaatcgaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4045008 tataaacaaatggaagtggttttgttagttttttaaatattgaatctcaaatttactatttcttagaatttattcgatattccttaactcaccaatcgaa 4044909  T
Q  113 tta 115  Q
    |||    
T  4044908 tta 4044906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 4044041 - 4043921
Alignment:
Q  107 atcgaattatctactcgagaccgtcattttttcataatatcgagaatcacattgtgatcgcaattgctaaaagacgccttcataaaaattagttgatgtc 206  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  4044041 atcgaattacctactcgagaccgtcattttttcgtaatatcaagaatcacattgtgatcgcaattgct-aaagacgccttcataaaaattagttggtgtc 4043943  T
Q  207 ttttaacagatgctcatagaat 228  Q
    ||||||||||||||||||||||    
T  4043942 ttttaacagatgctcatagaat 4043921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 3283328 - 3283386
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  3283328 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 3283386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 11238756 - 11238712
Alignment:
Q  184 cttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  11238756 cttcataaaaattagttgatgtcttttaacaaatgctcatagaat 11238712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 34673400 - 34673444
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  34673400 ttgctaaaagacaccttcataaaaattagttgatgtcttttaaca 34673444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 34673462 - 34673506
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  34673462 ttgctaaaagacaccttcataaaaattagttgatgtcttttaaca 34673506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 34673524 - 34673568
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  34673524 ttgctaaaagacaccttcataaaaattagttgatgtcttttaaca 34673568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 19228663 - 19228609
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  19228663 taaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 19228609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 19855568 - 19855510
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||| ||||||    
T  19855568 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcgtagaat 19855510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 41355517 - 41355459
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||| |||||||| ||||    
T  41355517 ttgctataagacaccttcataaaaattagttggtgtcttttaacaaatgctcattgaat 41355459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 54160488 - 54160434
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||    
T  54160488 taaaagacaccttcataaaaattagttggtgtcttttaacaaatgcttatagaat 54160434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 4126077 - 4126019
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||  | ||||||||||||| ||||||||||||| || |||||||||||||    
T  4126077 ttgctaaaagatacattcataaaaattaattgatgtcttttagcaaatgctcatagaat 4126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 8351152 - 8351098
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| | ||||||||||||||||| ||||||||| || |||||||||||||    
T  8351152 taaaagacacattcataaaaattagttggtgtcttttagcaaatgctcatagaat 8351098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 20513091 - 20513145
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||| || ||||||||||||||| ||| |||||||||||| |||||||||||||    
T  20513091 taaaaaacaccttcataaaaattaattggtgtcttttaacaaatgctcatagaat 20513145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 21395917 - 21395975
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| | || |||||| ||||||| |||||||||||| |||||||||||||    
T  21395917 ttgctaaaagacacatttataaaatttagttggtgtcttttaacaaatgctcatagaat 21395975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 35711884 - 35711942
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||| |||| || ||||||||| || |||||||||||||    
T  35711884 ttgctaaaagacaccttcataaaagttagctggtgtcttttagcaaatgctcatagaat 35711942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 38101245 - 38101303
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||| |||||||||||||| ||||||||| || ||| |||||||||    
T  38101245 ttgctaaaagacacctttataaaaattagttggtgtcttttagcaaatgatcatagaat 38101303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 45408346 - 45408292
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||  ||||||||| || |||||||||||||    
T  45408346 taaaagacaccttcataaaaattagtttgtgtcttttagcaaatgctcatagaat 45408292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 52945673 - 52945615
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| || |||||| || |||||||| ||||    
T  52945673 ttgctaaaagacaccttcataaaaattagttggtgccttttaccaaatgctcattgaat 52945615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 54253855 - 54253909
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| |||||||||  | |||||||||||||    
T  54253855 taaaagacaccttcataaaaattagttggtgtcttttaggaaatgctcatagaat 54253909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 6125874 - 6125833
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtctttta 211  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  6125874 ttgctaaaagacaccttcataaaaattagttggtgtctttta 6125833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 27026693 - 27026737
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||    
T  27026693 ttgctaaaagacaccttcctaaaaattagttggtgtcttttaaca 27026737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 27038039 - 27038083
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  27038039 ttgctaaaagacaccttcataaaaatgagttggtgtcttttaaca 27038083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 13700310 - 13700364
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||  ||||||||||||||||||| ||||||||| || ||||||| |||||    
T  13700310 taaaagataccttcataaaaattagttggtgtcttttagcaaatgctcaaagaat 13700364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 35280512 - 35280458
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    ||||||||| || ||||||||||||||||||  | |||||||||| |||||||||    
T  35280512 ttgctaaaaaacaccttcataaaaattagtttgtatcttttaacaaatgctcata 35280458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 39328516 - 39328474
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaa 212  Q
    |||||||||||| | ||||||||||||||||| ||||||||||    
T  39328516 ttgctaaaagacactttcataaaaattagttggtgtcttttaa 39328474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 54411848 - 54411906
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| || |||| |||||||||||||| ||||||||| || ||| |||||||||    
T  54411848 ttgctaaaaaacacctttataaaaattagttggtgtcttttagcaaatgatcatagaat 54411906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 4069625 - 4069580
Alignment:
Q  79 aatttattcgatattccttaactcaccaatcgaattatctactcga 124  Q
    |||||||| ||||| |||||||||| || |||||||||||||||||    
T  4069625 aatttatttgatatcccttaactcatcattcgaattatctactcga 4069580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 9665400 - 9665355
Alignment:
Q  183 ccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||||||||| ||||||||||||| ||| | |||||||    
T  9665400 ccttcataaaaattagttaatgtcttttaacaaatgttaatagaat 9665355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 36227895 - 36227854
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtctttta 211  Q
    |||||||||||| ||||||||||||||| ||| |||||||||    
T  36227895 ttgctaaaagacaccttcataaaaattaattggtgtctttta 36227854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 13942041 - 13942142
Alignment:
Q  14 ataaacaaatggaagtggttttgttagttttttaaatattgaatctcaaatttactattgcttagaatttattcgatattccttaactcaccaatcgaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13942041 ataaacaaatggaagtggttttgttagttttttaaatattgaatctcaaatttactatttcttagaatttattcgatattccttaactcaccaatcgaat 13942140  T
Q  114 ta 115  Q
    ||    
T  13942141 ta 13942142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 1838714 - 1838772
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  1838714 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 1838772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 15661132 - 15661182
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  15661132 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgct 15661182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 17452949 - 17453007
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||||| |||||||||||| ||||||||| || |||||||||||||    
T  17452949 ttgctaaaagacaccttcacaaaaattagttggtgtcttttagcaaatgctcatagaat 17453007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 25671034 - 25671088
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  25671034 taaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 25671088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 30414155 - 30414205
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  30414155 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgct 30414205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 42470856 - 42470802
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  42470856 taaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 42470802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 43939509 - 43939563
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||| ||| |||||||||||| |||||||||||||    
T  43939509 taaaagacaccttcataaaaattaattggtgtcttttaacaaatgctcatagaat 43939563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 7336111 - 7336167
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcataga 226  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||| ||||| |||||    
T  7336111 ttgctaaaagacaccttcataaaaattaattggtgtcttttaacaaatgcttataga 7336167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 2964915 - 2964973
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||| |||||| ||||||||||||||||||| ||||||||| || ||| |||||||||    
T  2964915 ttgcttaaagacaccttcataaaaattagttggtgtcttttagcaaatgttcatagaat 2964973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 8549615 - 8549673
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| || ||||||||||||||||||  |||||||||||| ||||| |||||||    
T  8549615 ttgctaaaaaacaccttcataaaaattagttagtgtcttttaacaaatgctaatagaat 8549673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 14463419 - 14463365
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||  ||||||||| || |||||||||||||    
T  14463419 taaaagacaccttcataaaaattagttagtgtcttttagcaaatgctcatagaat 14463365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 24992922 - 24992968
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    |||||||| ||||||||||||||||||| |||||||||||| |||||    
T  24992922 taaaagacaccttcataaaaattagttggtgtcttttaacaaatgct 24992968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 1406813 - 1406755
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||||| |||||||||| | ||||||||| || ||| |||||||||    
T  1406813 ttgctaaaagacaccttcacaaaaattagtcggtgtcttttaccaaatgttcatagaat 1406755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 1627728 - 1627785
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||| ||||||| ||||||||| || ||| |||||||||    
T  1627728 ttgctaaaagacaccttcataaaagttagttg-tgtcttttagcaaatgttcatagaat 1627785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 10769826 - 10769880
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||| | ||||||||||||||||||| ||||||||| || ||||| |||||||    
T  10769826 taaaaggcaccttcataaaaattagttggtgtcttttagcaaatgcttatagaat 10769880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 26213756 - 26213810
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| | || ||||| |||||||||||| |||||||| |||||||||||||    
T  26213756 taaaagacacatttataaatattagttgatgttttttaacaaatgctcatagaat 26213810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 30819571 - 30819607
Alignment:
Q  175 aaaagacgccttcataaaaattagttgatgtctttta 211  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  30819571 aaaagacaccttcataaaaattagttggtgtctttta 30819607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 47921664 - 47921620
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| ||||||||||||||| ||| | ||||||||||    
T  47921664 ttgctaaaagacaccttcataaaaattaattggtatcttttaaca 47921620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 23204480 - 23204422
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  23204480 ttgctaaaagacaccttcataaaaattagttgatgtcttttaacaaatgctcatagaat 23204422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 16994194 - 16994252
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||    
T  16994194 ttgctaaaagacatcttcataaaaattagttggtgtcttttaacaaatgctcatagaat 16994252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 26730359 - 26730413
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  26730359 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctcata 26730413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 19325093 - 19325151
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| | ||||||| || |||||||||||||    
T  19325093 ttgctaaaagacaccttcataaaaattagttggtttcttttagcaaatgctcatagaat 19325151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 28813113 - 28813171
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||||||| |||||||||||||| ||||||||| || ||| |||||||||    
T  28813113 ttgctaaaagacgcctttataaaaattagttggtgtcttttagcaaatgatcatagaat 28813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 28038262 - 28038317
Alignment:
Q  173 ctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| ||||||||||||||||||| ||| ||||| || |||||||||||||    
T  28038262 ctaaaagacaccttcataaaaattagttggtgtgttttagcaaatgctcatagaat 28038317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 37172450 - 37172505
Alignment:
Q  173 ctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| ||||||||||||||||||| ||||||||| || |||||| ||||||    
T  37172450 ctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcgtagaat 37172505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 9741829 - 9741771
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| || ||||||||||||||||||| ||| ||||| || |||||||||||||    
T  9741829 ttgctaaaaaacaccttcataaaaattagttggtgttttttagcaaatgctcatagaat 9741771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 17689394 - 17689451
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||||||||||||||| || ||||||||| || |||||||||||||    
T  17689394 ttgctaaaagacaccttcataaaaattag-tggtgtcttttagcaaatgctcatagaat 17689451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 18015746 - 18015693
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcat 223  Q
    ||||||||| || ||||||||||||||||||| |||||||||||| ||| ||||    
T  18015746 ttgctaaaaaacaccttcataaaaattagttggtgtcttttaacaaatgttcat 18015693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 19323755 - 19323805
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    |||||||||||| | ||||||||||||| ||| |||||||||||| |||||    
T  19323755 ttgctaaaagacactttcataaaaattaattggtgtcttttaacaaatgct 19323805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 20269333 - 20269279
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||| ||| ||||||||| || ||| |||||||||    
T  20269333 taaaagacaccttcataaaaattaattgttgtcttttagcaaatgttcatagaat 20269279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 27365819 - 27365761
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||| ||||||  ||| || |||||||||||| |||||||||||||    
T  27365819 ttgctaaaagacacctttataaaacctaggtggtgtcttttaacaaatgctcatagaat 27365761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 16273620 - 16273661
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtctttta 211  Q
    |||||||||||| ||||||||||||||||||  |||||||||    
T  16273620 ttgctaaaagacaccttcataaaaattagtttgtgtctttta 16273661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 31042578 - 31042627
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgc 219  Q
    |||||||||||| | || |||||||||||||| |||||||||||| ||||    
T  31042578 ttgctaaaagacactttaataaaaattagttggtgtcttttaacaaatgc 31042627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 19995379 - 19995324
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||||||||   ||||||| ||| |||||||| |||||||||||||    
T  19995379 ttgctaaaagacaccttcataa---ttagttggtgttttttaacaaatgctcatagaat 19995324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 27907093 - 27907035
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  27907093 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctcatagaat 27907035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 42434285 - 42434343
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  42434285 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctcatagaat 42434343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 6137363 - 6137305
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||    
T  6137363 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctaatagaat 6137305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 19329463 - 19329405
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  19329463 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgatcatagaat 19329405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 13387086 - 13387029
Alignment:
Q  171 tgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  13387086 tgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 13387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 13372475 - 13372417
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||||| ||||    
T  13372475 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatggaat 13372417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 13382676 - 13382618
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||||| ||||    
T  13382676 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatggaat 13382618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 32626118 - 32626176
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||  |||||||||||||||||| ||||||||| || |||||||||||||    
T  32626118 ttgctaaaagacaacttcataaaaattagttggtgtcttttagcaaatgctcatagaat 32626176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 32868088 - 32868030
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| || ||||||||||||||||||| ||||||||| || |||||||||||||    
T  32868088 ttgctaaaacacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 32868030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 34728276 - 34728334
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || ||||| |||||||    
T  34728276 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgcttatagaat 34728334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 38427125 - 38427183
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||| | |||||||    
T  38427125 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgttaatagaat 38427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 51682619 - 51682673
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  51682619 taaaagacaccttcataaaaattagttggtgtcttttaacaaatgttcatagaat 51682673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 40875315 - 40875258
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaa 227  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||| || |||||||||    
T  40875315 ttgctaaaagacaccttcataaaaattagttggtgtctttgaacaaatactcatagaa 40875258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 40479950 - 40479906
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  40479950 ttgctaaaaaacaccttcataaaaattagttgatgtcttttaaca 40479906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 5975759 - 5975709
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    |||||||||||| ||||||||||||||||||| ||||||| |||| |||||    
T  5975759 ttgctaaaagacaccttcataaaaattagttggtgtctttcaacaaatgct 5975709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 6944616 - 6944674
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||| ||||||| |||| |||| || |||||||||||||    
T  6944616 ttgctaaaagacaccttcataaaacttagttggtgtcgtttagcaaatgctcatagaat 6944674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 20503536 - 20503478
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||| |||||||||||||| ||||||||| || ||| |||||||||    
T  20503536 ttgctaaaagacacctttataaaaattagttggtgtcttttagcaaatgatcatagaat 20503478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 51702556 - 51702502
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| | ||||||| || |||||||||||||    
T  51702556 taaaagacaccttcataaaaattagttggtttcttttagcaaatgctcatagaat 51702502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 52344597 - 52344539
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| | |||||||| |||||||| |||||||||||| ||||| |||||||    
T  52344597 ttgctaaaagacacattcataaatattagttggtgtcttttaacaaatgcttatagaat 52344539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 47960351 - 47960392
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtctttta 211  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  47960351 ttgctaaaagacaccttcataaaaattagttggtgtctttta 47960392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 52719150 - 52719105
Alignment:
Q  183 ccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||| |||||||||||||||||||||||||| ||||| |||||||    
T  52719150 ccttcgtaaaaattagttgatgtcttttaacaaatgctaatagaat 52719105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 34041248 - 34041304
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcataga 226  Q
    |||||||||||| ||||||| ||||||| ||| |||||||||||| ||||| |||||    
T  34041248 ttgctaaaagacaccttcattaaaattacttggtgtcttttaacaaatgcttataga 34041304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 11020404 - 11020462
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||||||||||| || ||| | |||||||||| ||| |||||||||    
T  11020404 ttgctaaaagacaccttcataaaaaataattggtatcttttaacaaatgttcatagaat 11020462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 20835810 - 20835752
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||| ||||| ||||||| | |||||||||| ||||| |||||||    
T  20835810 ttgctaaaagacaccttcgtaaaatttagttggtatcttttaacaaatgctaatagaat 20835752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 28755487 - 28755437
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    ||||||||  |||||||||||||| ||| |||||||||||| |||||||||    
T  28755487 taaaagacaacttcataaaaattaattggtgtcttttaacaaatgctcata 28755437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 32090023 - 32090069
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    |||||||| | ||||||||||||||||| |||||||||||| |||||    
T  32090023 taaaagacacattcataaaaattagttggtgtcttttaacaaatgct 32090069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 43837746 - 43837787
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtctttta 211  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  43837746 ttgctaaaggacaccttcataaaaattagttggtgtctttta 43837787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 48860782 - 48860837
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||| ||||||| |||||||||   ||||||| |||||||||||| |||||||||||||    
T  48860782 ttgcgaaaagacaccttcataa---ttagttggtgtcttttaacaaatgctcatagaat 48860837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 10664741 - 10664799
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  10664741 ttgctaaaagacgccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 10664799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 12895433 - 12895374
Alignment:
Q  169 attgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  12895433 attgttaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctcatagaat 12895374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 1749968 - 1750026
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||    
T  1749968 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctaatagaat 1750026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 24314318 - 24314264
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  24314318 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctcata 24314264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 42090518 - 42090460
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  42090518 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgttcatagaat 42090460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 9548262 - 9548318
Alignment:
Q  172 gctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  9548262 gctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 9548318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 12725767 - 12725825
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||  | |||||||||||||    
T  12725767 ttgctaaaagacaccttcataaaaattagttggtgtcttttagtaaatgctcatagaat 12725825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 18924589 - 18924647
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||| ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  18924589 ttgctaaaggacaccttcataaaaattagttggtgtcttttaacaaatgttcatagaat 18924647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 21950743 - 21950685
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| | |||||||| |||||||| ||| |||||||| |||||||||||||    
T  21950743 ttgctaaaagacacattcataaatattagttggtgttttttaacaaatgctcatagaat 21950685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 29471684 - 29471742
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||  ||||||||| || ||| |||||||||    
T  29471684 ttgctaaaagacaccttcataaaaattagtttgtgtcttttagcaaatgttcatagaat 29471742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 39089153 - 39089211
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||  |||||||||||||||||| |||||||||||| ||| | |||||||    
T  39089153 ttgctaaaagacatcttcataaaaattagttggtgtcttttaacaaatgttaatagaat 39089211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 2969698 - 2969742
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||    
T  2969698 ttgctaaaagacaccttcataaaaattagttggtatcttttaaca 2969742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 16719780 - 16719821
Alignment:
Q  173 ctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    ||||||||| ||||||||||||||||||  ||||||||||||    
T  16719780 ctaaaagacaccttcataaaaattagtttgtgtcttttaaca 16719821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 44539893 - 44539942
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgc 219  Q
    ||||||||| || ||||||||||||||||||| | |||||||||| ||||    
T  44539893 ttgctaaaatacaccttcataaaaattagttggtatcttttaacaaatgc 44539942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 35221719 - 35221775
Alignment:
Q  172 gctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  35221719 gctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctcatagaat 35221775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 41585931 - 41585989
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||    
T  41585931 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctaatagaat 41585989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 45100074 - 45100016
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||    
T  45100074 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgctcattgaat 45100016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 3203345 - 3203401
Alignment:
Q  172 gctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||    
T  3203345 gctaaaagacaccttcataaaaattagttggtgtctttaaacaaatgctcatagaat 3203401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 5995105 - 5995159
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||||||    
T  5995105 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcata 5995159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 21993573 - 21993515
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||| | ||||| |||||||    
T  21993573 ttgctaaaagacaccttcataaaaattagttggtgtcttttaaaaaatgctaatagaat 21993515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 31953258 - 31953206
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcataga 226  Q
    ||||| || ||||||||||||||| |||||||||||||||| |||||||||||    
T  31953258 taaaaaacaccttcataaaaattaattgatgtcttttaacaaatgctcataga 31953206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 3961280 - 3961222
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| || |||| |||||||||||||| |||||||||||| ||| |||||||||    
T  3961280 ttgctaaaaaacaccttaataaaaattagttggtgtcttttaacaaatgatcatagaat 3961222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 35983210 - 35983152
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||  ||||||||||||||| ||| ||||||||| || |||||||||||||    
T  35983210 ttgctaaaagataccttcataaaaattaattggtgtcttttagcaaatgctcatagaat 35983152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 36004622 - 36004564
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||  ||||||||||||||| ||| ||||||||| || |||||||||||||    
T  36004622 ttgctaaaagataccttcataaaaattaattggtgtcttttagcaaatgctcatagaat 36004564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 41037228 - 41037170
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||| ||||||  ||||||||| || |||||||||||||    
T  41037228 ttgctaaaagacaccttcataaaacttagtttgtgtcttttaccaaatgctcatagaat 41037170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 41378423 - 41378481
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||| ||| ||||||||| || ||| |||||||||    
T  41378423 ttgctaaaagacaccttcataaaaattaattggtgtcttttagcaaatgttcatagaat 41378481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 46003784 - 46003834
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    |||||||||||| |||| |||||||||||||||||||||||| || |||||    
T  46003784 ttgctaaaagacacctttataaaaattagttgatgtcttttagcaaatgct 46003834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 48227283 - 48227341
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||| |||||||||||||| ||||||||| || ||| |||||||||    
T  48227283 ttgctaaaagacacctttataaaaattagttggtgtcttttagcaaatgatcatagaat 48227341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 27131100 - 27131059
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtctttta 211  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  27131100 ttgctaaaagacaccttcataaaaattagttggtgtctttta 27131059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 26928017 - 26928054
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtct 207  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  26928017 ttgctaaaagacaccttcataaaaattagttggtgtct 26928054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 38368263 - 38368222
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtctttta 211  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  38368263 ttgctaaaatacaccttcataaaaattagttggtgtctttta 38368222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 48709087 - 48709128
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtctttta 211  Q
    |||||||||||| ||||||||||||||||||  |||||||||    
T  48709087 ttgctaaaagacaccttcataaaaattagttagtgtctttta 48709128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 12362888 - 12362928
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    ||||||||  ||||||||||||| |||||||||||||||||    
T  12362888 taaaagacatcttcataaaaatttgttgatgtcttttaaca 12362928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 27946879 - 27946919
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||| ||||||||||||||||||| ||| ||||||||    
T  27946879 taaaagacaccttcataaaaattagttggtgtgttttaaca 27946919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 36343088 - 36343052
Alignment:
Q  188 ataaaaattagttgatgtcttttaacagatgctcata 224  Q
    |||||||||||||| |||||||||||| |||||||||    
T  36343088 ataaaaattagttggtgtcttttaacaaatgctcata 36343052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 42373510 - 42373554
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    ||||||||||||  |||||||||||||| ||| ||||||||||||    
T  42373510 ttgctaaaagacatcttcataaaaattaattggtgtcttttaaca 42373554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 43077545 - 43077589
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||  |||| |||||||||||||| ||||||||||||    
T  43077545 ttgctaaaagaaaccttgataaaaattagttggtgtcttttaaca 43077589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 10078408 - 10078350
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  10078408 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 10078350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 22812379 - 22812433
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  22812379 taaaagacaccttcataaaaattagttggtgtcttttaacaaatgctcatagaat 22812433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 26912375 - 26912433
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| ||||||||| || |||||||||||||    
T  26912375 ttgctaaaagacaccttcataaaaattagttggtgtcttttagcaaatgctcatagaat 26912433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 33568121 - 33568179
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||||||||||| |||||| |||||||||||| |||||||||||||    
T  33568121 ttgctaaaagacaccttcataaaaactagttggtgtcttttaacaaatgctcatagaat 33568179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 39077336 - 39077394
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  39077336 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaatgttcatagaat 39077394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 19922614 - 19922560
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||    
T  19922614 ttgctaaaagacaccttcataaaaattaattggtgtcttttaacaaatgctcata 19922560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 28539267 - 28539213
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    |||||||||||| ||||||||||||||||||| | |||||||||| |||||||||    
T  28539267 ttgctaaaagacaccttcataaaaattagttggtatcttttaacaaatgctcata 28539213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 44874016 - 44873958
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| |||||||||||||||| || ||||||||| || |||||||||||||    
T  44874016 ttgctaaaagacaccttcataaaaattagctggtgtcttttagcaaatgctcatagaat 44873958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 254003 - 254061
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| | ||| ||||||||||||| |||||||||||| ||| |||||||||    
T  254003 ttgctaaaagacactttcctaaaaattagttggtgtcttttaacaaatgttcatagaat 254061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 661855 - 661797
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| | ||| ||||||||||||| |||||||||||| ||| |||||||||    
T  661855 ttgctaaaagacactttcctaaaaattagttggtgtcttttaacaaatgttcatagaat 661797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 5224402 - 5224345
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| || ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  5224402 ttgctaaaa-acaccttcataaaaattagttggtgtcttttaacaaatgttcatagaat 5224345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 9478811 - 9478757
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||| | |||||||    
T  9478811 taaaagacaccttcataaaaattagttggtgtcttttaacaaatgttaatagaat 9478757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 16930857 - 16930915
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||| || | ||||||||||||||||| |||||||||| | |||||||||||||    
T  16930857 ttgctaaaaaacactttcataaaaattagttggtgtcttttaaaaaatgctcatagaat 16930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 23472617 - 23472559
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| | ||||||| || || ||||||||||    
T  23472617 ttgctaaaagacaccttcataaaaattagttggtatcttttagcaaatcctcatagaat 23472559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 31272827 - 31272885
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||  ||| |||||||||||||| |||||||||||| || ||||||||||    
T  31272827 ttgctaaaagacatctttataaaaattagttgttgtcttttaacaaatactcatagaat 31272885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 38498303 - 38498361
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||| ||| | |||||||    
T  38498303 ttgctaaaagacaccttcataaaaattaattggtgtcttttaacaaatgttaatagaat 38498361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 42806315 - 42806261
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    |||||||||||| ||||||||||||||||||  |||||| ||||| |||||||||    
T  42806315 ttgctaaaagacaccttcataaaaattagtttgtgtcttctaacaaatgctcata 42806261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 28969168 - 28969211
Alignment:
Q  185 ttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||    
T  28969168 ttcataaaaattaattggtgtcttttaacaaatgctcatagaat 28969211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 847653 - 847595
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| | | | ||||||||||||| |||||||||||| ||| |||||||||    
T  847653 ttgctaaaagacacttccctaaaaattagttggtgtcttttaacaaatgttcatagaat 847595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 9479514 - 9479460
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| | ||||||||||||||||  ||||||||| || |||||||||||||    
T  9479514 taaaagacactttcataaaaattagtttgtgtcttttagcaaatgctcatagaat 9479460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 12295219 - 12295277
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||| ||| ||| | |||||||||| ||||| |||||||    
T  12295219 ttgctaaaagacaccttcataaaatttaattggtatcttttaacaaatgctaatagaat 12295277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 14916719 - 14916773
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||  ||||||||||||||||||| | ||||||| || |||||||||||||    
T  14916719 taaaagataccttcataaaaattagttggtatcttttagcaaatgctcatagaat 14916773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 41829576 - 41829630
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||  |||||||||||||||||  |||||||||||| ||| |||||||||    
T  41829576 taaaagacatcttcataaaaattagtttgtgtcttttaacaaatgttcatagaat 41829630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 30774216 - 30774171
Alignment:
Q  183 ccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||||||||| | ||||||| || |||||||||||||    
T  30774216 ccttcataaaaattagttggtatcttttagcaaatgctcatagaat 30774171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 1983531 - 1983575
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| | ||||||||||||||||||| | ||||||||    
T  1983531 ttgctaaaagacactttcataaaaattagttgatattttttaaca 1983575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 40067609 - 40067649
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    ||||| || ||||||||||||||||||| ||||||||||||    
T  40067609 taaaatacaccttcataaaaattagttggtgtcttttaaca 40067649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 94862 - 94919
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| || ||||||||||    
T  94862 ttgctaaaagacaccttcataaaaattagttggtgtcttttaacaaat-ctcatagaat 94919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 478409 - 478355
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||| ||||||||||||||||||| |||||||||||| ||| |||||||||    
T  478409 taaaagacaccttcataaaaattagttggtgtcttttaacaaatgttcatagaat 478355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 392509 - 392451
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||    
T  392509 ttgctaaaagacaccttcataataattagttggtgtcttttagcaaatgctcatagaat 392451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 15081224 - 15081166
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||| ||||| ||| |||||||||||| |||||||||||||    
T  15081224 ttgctaaaagacaccttcataacaattaattggtgtcttttaacaaatgctcatagaat 15081166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 18096421 - 18096376
Alignment:
Q  183 ccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  18096421 ccttcataaaaattagttggtgtcttttaacaaatgctcatagaat 18096376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 18102541 - 18102496
Alignment:
Q  183 ccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  18102541 ccttcataaaaattagttggtgtcttttaacaaatgctcatagaat 18102496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 12159501 - 12159551
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||| |||||    
T  12159501 ttgctaaaagacaccttcataaaaattagttggtgtcttctaacaaatgct 12159551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 17347099 - 17347149
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgct 220  Q
    ||||||||||||  |||||||||||||||||| |||||||||||| |||||    
T  17347099 ttgctaaaagacatcttcataaaaattagttggtgtcttttaacaaatgct 17347149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 19104333 - 19104387
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    ||||||||| || ||||| ||||||||||||| |||||||||||| |||||||||    
T  19104333 ttgctaaaacacaccttcgtaaaaattagttggtgtcttttaacaaatgctcata 19104387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 9891476 - 9891432
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||    
T  9891476 ttgctaaaagacacattcataaaaattagttggtgtcttttaaca 9891432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 10075092 - 10075052
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  10075092 taaaagacaccttcataaaaattagttggtgtcttttaaca 10075052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 6322593 - 6322535
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||| ||  ||| |||||||| ||||| |||||||    
T  6322593 ttgctaaaagacaccttcataaaaattaatttgtgttttttaacaaatgctaatagaat 6322535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 9533468 - 9533418
Alignment:
Q  174 taaaagacgccttcataaaaattagttgatgtcttttaacagatgctcata 224  Q
    |||||||| |||||||||||||| |||  |||||||||||| |||||||||    
T  9533468 taaaagacaccttcataaaaatttgttagtgtcttttaacaaatgctcata 9533418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 17889 - 17845
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaaca 214  Q
    ||||||||| || ||||||||||||||||||||||||||||||||    
T  17889 ttgctaaaaaacaccttcataaaaattagttgatgtcttttaaca 17845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 35157 - 35099
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||||||||| | ||||| ||| || |||||||||||||    
T  35157 ttgctaaaagacaccttcataaaaattagtcggtgtctcttagcaaatgctcatagaat 35099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 121686 - 121744
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| | ||||||||||||| ||| ||||||||| || |||||||||||||    
T  121686 ttgctaaaagactcattcataaaaattaattggtgtcttttagcaaatgctcatagaat 121744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 231189 - 231240
Alignment:
Q  177 aagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    ||||| ||||||||||||||||||| | |||||||||| ||| |||||||||    
T  231189 aagacaccttcataaaaattagttggtatcttttaacaaatgttcatagaat 231240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 9254 - 9197
Alignment:
Q  170 ttgctaaaagacgccttcataaaaattagttgatgtcttttaacagatgctcatagaat 228  Q
    |||||||||||| ||||||||||| ||||||| | ||||||| || |||||||||||||    
T  9254 ttgctaaaagacaccttcataaaa-ttagttggtatcttttagcaaatgctcatagaat 9197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University