View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14398_low_4 (Length: 441)
Name: NF14398_low_4
Description: NF14398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14398_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 225 - 424
Target Start/End: Complemental strand, 29100132 - 29099933
Alignment:
| Q |
225 |
tagcaaattttacccattgtcgtagtgttgttgtaaatagtgttggtcttcctatttatagcgatactaccttaggatacaatccagtgaagagactttc |
324 |
Q |
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| T |
29100132 |
tagccaattctacccattgtcgtagtgttgttgtaaatagtgttggtcttcctatttatagcaatactaccttaggatacaatccagtgaagagactttc |
29100033 |
T |
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| Q |
325 |
attttcgtctcccactagccaattccattttctttatagattagtcctagaggcattccttctaacactttctttctaatactcactatctaatcgaata |
424 |
Q |
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| T |
29100032 |
attttcgtctgccactagccaattccattttctttatagattagtcctagaggcattccttctaacactttctttctgatactcattatctaatcgaata |
29099933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 29100339 - 29100258
Alignment:
| Q |
15 |
taagaaaaaactttattagaataattgtatccatgattagtaaatgtatcccatatttacatattctttaatttgtatacac |
96 |
Q |
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| T |
29100339 |
taagaaaaaactttattaggataattgtatccatgattagtaaatggatcccatatttacatattctttaatttgtatacac |
29100258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 29100217 - 29100175
Alignment:
| Q |
143 |
ctattaaaattcatatatttcatgtatgtcgttttcacttaac |
185 |
Q |
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| T |
29100217 |
ctattaaaattcatctctttcatgtatgccgttttcacttaac |
29100175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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