View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_high_17 (Length: 271)
Name: NF14399_high_17
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 3098418 - 3098634
Alignment:
| Q |
24 |
cctgtgttattattcttcaaaaacacatcgaattttgtccatagcatgagtaaagaggatggcttccttgtaaagataagatttgattgtgtactaattt |
123 |
Q |
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| T |
3098418 |
cctgtgttattatttttcaaaaacacatcaaattttgtccatagcatgagtaaagaggatcgcttccttgtaaagataagatttgattgtgtactaattt |
3098517 |
T |
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| Q |
124 |
cacctctaaatgctttccaacaatcatttagcagctgcaaatacaaagcagtcaccgtctagatttttaactttaaaaccaaagagtaataaatgttaaa |
223 |
Q |
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| T |
3098518 |
cacctctaaatgctttccaacaatcatttagcagctgc-aatacaaagcagtcaccgtctagatttttaactttaaaaccaaagagtaataaatgttaaa |
3098616 |
T |
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| Q |
224 |
atagtttttaaaattgtg |
241 |
Q |
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|||||||||||||||||| |
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| T |
3098617 |
atagtttttaaaattgtg |
3098634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 74 - 190
Target Start/End: Original strand, 3092381 - 3092494
Alignment:
| Q |
74 |
taaagaggatggcttccttgtaaagataagatttgattgtgtactaatttcacctctaaatgctttccaacaatcatttagcagctgcaaatacaaagca |
173 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3092381 |
taaagaggatcgcttccttgtaaagataagatttgattgtgtact---ttcacttctgaatgctttccaacaatcatttagcagctgcaaaaacaaagca |
3092477 |
T |
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| Q |
174 |
gtcaccgtctagatttt |
190 |
Q |
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||||| |||||||||| |
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| T |
3092478 |
atcaccatctagatttt |
3092494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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