View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14399_high_2 (Length: 632)

Name: NF14399_high_2
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14399_high_2
NF14399_high_2
[»] chr2 (1 HSPs)
chr2 (9-614)||(857319-857958)


Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 614
Target Start/End: Original strand, 857319 - 857958
Alignment:
Q  9 cgaagaaaataaactagaaatctggatggttaacaaccaaagtcactttaagattattttttgtcttgttaagaattaaaactaatacaaactttagcaa 108  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  857319 cgaaaaaaaaaaactagaaatctggatggttaacaaccaaagtcactttaagattattttttgtcttgttaagaattaaaactaatacaaactttagcaa 857418  T
Q  109 atgaaattcctcnnnnnnnnnnnnnnnnncatacatggagtcgttcacttcaacatttggtttctctaatgatttcgtgaaggaaagttttgtacttggt 208  Q
    ||||||||||||                 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  857419 atgaaattcctcaaaataaaaattaaaaacatacatggagtcgtgcacttcaacatttggtttctctaatgatttcgtgaaggaaagttttgtacttggt 857518  T
Q  209 ttaggaccatattccacccaaaacttcaagatatctcgtataaaaattatctctcttatatattcatcatttagtttatttataattgtggtaatgaagg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  857519 ttaggaccatattccacccaaaacttcaagatatctcgtataaaaattatctctcttatatattcatcatttagtttatttataattgtggtaatgaagg 857618  T
Q  309 taaatgttgttgacatctaccaaaaatttcactatcttaggaatcaaatatactaatctcttaggttagactctcatctttcttgagcttaattcttaac 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  857619 taaatgttgttgacatctaccaaaaatttcactatcttaggaatcaaatatactaatctcttaggttagactctcatctttcttgagcttaataattaac 857718  T
Q  409 taattagatttgtgtcacttaagattctacatcttatggagatagttttgtggtgcc-------------------aaaataacatacaattttggaatt 489  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||    
T  857719 acattagatttgtgtcacttaagattctacatcttatggagatagttttgtggtgccaataacaattggattcagaaaaataacatacaattttggaatt 857818  T
Q  490 aatgaagaattcaaaagtgtacatgtttttattttt---------------gatgtgttaaaacatatcttcacacacaaatacaaattgtttgttagta 574  Q
    ||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||    
T  857819 aatgaagaattcaaaagtgtacatgtttttatttttgaaaggacaaaacaagatgtgttaaaacatatcttcacacacaaatacaaattgtttgttagta 857918  T
Q  575 aataataatcaagataataaaactagtataagggacacat 614  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  857919 aataataatcaagataataaaactagtataagggacacat 857958  T

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