View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_high_24 (Length: 218)
Name: NF14399_high_24
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_high_24 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 22616 - 22420
Alignment:
| Q |
8 |
catcatcatagtgatggtaaataaaatccctatataaaatgtaaatagtttgacctagaccaatcacatagtttcatagcaagaaatcct-nnnnnnnnn |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22616 |
catcatcatagtgatggtaaataaaatccctatataaaatgtaaatagttggacctagaccaatcacatagtttcatagcaagaaatcctaaaaaaaaaa |
22517 |
T |
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| Q |
107 |
ggtaaataaacatcctctatttatcacctggttttcatggacctccttgttggatcaggaggttcccaaactttccatgaggatatagcttcctcttg |
204 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22516 |
agtaaa-aaacatcctctatttttcacctggttttcatggacctccttgttcgatcaggaggttcccaaactttccatgaggatatagcttcctcttg |
22420 |
T |
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