View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_high_4 (Length: 557)
Name: NF14399_high_4
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 17 - 542
Target Start/End: Complemental strand, 40576339 - 40575812
Alignment:
| Q |
17 |
acatcaagatcaagacttttacagttgcacttttagcacaaagcggcgagttnnnnnnnn--gcagttcaacttatcatatcatctcagttgttttcttt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40576339 |
acatcaagatcaagacttttacagttgcacttttagcacaaagcggcaagttaaaaaaaaaagcagttcaacttatcatatcatctcagttgttttcttt |
40576240 |
T |
|
| Q |
115 |
tgtaatgctttccagcacaggtaagttggttgattttatctctgaagttgctggttctgtcaaaacagtacaatccatgttgcaaaatgaatcttttgct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40576239 |
tgtaatgctttccagcacaggtaagttggttgattttatctctgaagttgctggttctgtcaaaacagtacaatccatgttgcaaaatgaatcttttgct |
40576140 |
T |
|
| Q |
215 |
gcaaagggtatccttgctgaagttgccatatcaatgctggtaggggtgacacattgatacggggtagacaaacctttgcttaattcttggtttttaggat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40576139 |
gcaaagggtatccttgctgaagttgccatatcaatgctggtaggggtgacacattgatacggggtagacaaacctttgcttaattcttggtttttaggat |
40576040 |
T |
|
| Q |
315 |
aatcaaaaagctccttgtgattcgataactccataccattggatttatcttggaagctgatatcagtcttacaaaaaggaagagaatcaccgttgatctt |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40576039 |
aatcaaaaagctccttgtgatttgataactccataccattggatttatcttggaagctgatatcagtcttacaaaaagaaagagaatcaccgttgatctt |
40575940 |
T |
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| Q |
415 |
ttcctgagtcttggaatttatgttcacgagtccaacttgttcgatcaaacaatcaacttgattataatgatagacactgtcctggtgatcgacacgggtc |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40575939 |
ttcctgagtcttggaatttatgttcacgagtccaacttgttcgatcaaacaatcaacttgattataatgatagacactgtcctggtgatcgacacgggtc |
40575840 |
T |
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| Q |
515 |
agtggacacaaatcataattagttctct |
542 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40575839 |
agtggacacaaatcataattagttctct |
40575812 |
T |
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