View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_high_5 (Length: 546)
Name: NF14399_high_5
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 8287864 - 8288127
Alignment:
| Q |
14 |
catcatcattaggaaacagaaacagaaagctcaggtgggaaagtgaaatcagagttgagaaagagagatgacagagaacgcatatataaggtttgagagg |
113 |
Q |
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| T |
8287864 |
catcatcattaggaaacaaaaacagaaagctcaggtgggaaagtgaaatcagagttgagaaagagagatgacagagaacgcatatataaggtttgagagg |
8287963 |
T |
|
| Q |
114 |
agagataa-nnnnnnnnnnnnnaattcaaatttccacatgagggtgtatattataagggtctataactaattatccataa------aaaagagtaatgtt |
206 |
Q |
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| T |
8287964 |
agagataattttttatttttttaattcaaatttccacatgagggtgtatattataa-ggtctataactaattatccataaaaaaataaaagagtaatgtt |
8288062 |
T |
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| Q |
207 |
tcattgacaacctttttctccatacctttaacatacaccctaatgtggcaagggcatttatgtaa |
271 |
Q |
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| T |
8288063 |
tcattgacaacctttttctccatacctttaacatacaccccaatgtggcaggggcgtttatgtaa |
8288127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 367 - 529
Target Start/End: Original strand, 8288217 - 8288379
Alignment:
| Q |
367 |
tctctcttgcgactcccttccccttcaaccacattccctctcccaccaccatcatcgcctcatccctccctctgccctatcctctcttcatctcacacca |
466 |
Q |
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| T |
8288217 |
tctctcttgcgactcccttccccttcgaccaaattccctctcccaccaccatcatcgcctcatccctccctctgcactaccctctcttcatctcccacca |
8288316 |
T |
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| Q |
467 |
ccagccgccatacccactacctttgcatctttcttctctgattaacccattcttcttcggtct |
529 |
Q |
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| T |
8288317 |
ccagccgccacacccactacctttgcatctttcttctctgattaacccattcttcttcagtct |
8288379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 409 - 525
Target Start/End: Original strand, 1175332 - 1175450
Alignment:
| Q |
409 |
ccaccaccatcatcgcctcatccctccctctgccctatcctctcttcatctcacaccaccagccgccata-cccactacc-tttgcatctttcttctctg |
506 |
Q |
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|||||||||| | | |||||||| ||||||||||||| ||||||||||||| ||||| ||||| |||| ||||||||| ||||||| ||||||||| |
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| T |
1175332 |
ccaccaccattaacacctcatccttccctctgccctaccctctcttcatcttgcaccatcagccatcataccccactaccttttgcatatttcttctcct |
1175431 |
T |
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| Q |
507 |
attaacccattcttcttcg |
525 |
Q |
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| T |
1175432 |
attaaccaattcttcttcg |
1175450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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