View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14399_low_1 (Length: 739)

Name: NF14399_low_1
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14399_low_1
NF14399_low_1
[»] chr8 (3 HSPs)
chr8 (416-723)||(29683823-29684130)
chr8 (57-344)||(29685196-29685483)
chr8 (57-344)||(29688327-29688635)
[»] chr7 (2 HSPs)
chr7 (57-200)||(37647120-37647264)
chr7 (346-381)||(37546516-37546551)
[»] chr5 (3 HSPs)
chr5 (214-344)||(6606790-6606918)
chr5 (107-198)||(6606637-6606728)
chr5 (57-98)||(1433824-1433865)
[»] chr2 (2 HSPs)
chr2 (107-174)||(44039510-44039577)
chr2 (346-379)||(9169739-9169772)
[»] chr3 (3 HSPs)
chr3 (349-381)||(45644049-45644081)
chr3 (60-128)||(5256762-5256830)
chr3 (344-381)||(49429261-49429298)
[»] chr4 (1 HSPs)
chr4 (58-99)||(21098740-21098781)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 416 - 723
Target Start/End: Complemental strand, 29684130 - 29683823
Alignment:
Q  416 gatttagtttctgtgatttgattgggtgatttggtttaggtgtgggttgataacttggactgttggatctttgaatggtcttttttaggattgatcatac 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  29684130 gatttagtttctgtgatttgattgggtgatttggtttaggtgtgggttgatgacttggacggttggatctttgaatggttttttttaggattgatcatac 29684031  T
Q  516 gaaagatgtattaaatccaaatctaaataattattctagccgaaaaaatctcaacaaattactttcttgtccataaagcaacctcaaaaagaaaccctaa 615  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29684030 gaaagatgtattaaatccaaatctaaataattattgtagccgaaaaaatctcaacaaattactttcttgtccataaagcaaccttaaaaagaaaccctaa 29683931  T
Q  616 cctcattatctataaattggcttgcaaaccataagaaaaagtgcacac-nnnnnnnnttcaacgagataaagaagtttcagcgttcagaagaaaaagaaa 714  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  29683930 cctcattatctataaattggcttgc-aaccataagaaaaagtgcacacaaaaaaaaattcaacgagataaagaagtttcagcgttcagaagaaaaagaaa 29683832  T
Q  715 cgatcatgt 723  Q
    |||||||||    
T  29683831 cgatcatgt 29683823  T

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Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 57 - 344
Target Start/End: Complemental strand, 29685483 - 29685196
Alignment:
Q  57 tactttaattttgaaaatataaatatacatcataattctttccnnnnnnntatacttcataattattctcttgtgattccgcgttcagtttttaataata 156  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29685483 tactttaattttgaaaatataaatatacatcataattctttccaaaaaaatatacttcataattattctcttgtgattccgcgttcagtttttaataata 29685384  T
Q  157 ttcattgtggataaaactttttcaacaattatagttgtcacacaaacacacacagaaaactctaaaagaaaatatatcaatgagtgaacaacatattttc 256  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29685383 ttcattgtggagaaaactctttcaacaattatagttgtcacacatacacacacagaaaactctaaaaggaaatatatcaatgagtgaacaacatattttc 29685284  T
Q  257 ttgtctccactaacgttatagaaaagattgttatgtacataaaataagaaaatactaacaaacacctttaggaaattttttaaacaat 344  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29685283 ttgtctccactaatgttatagaaaagattgttatgtacataaaataagaaaatactaacaaacacctttaagaaattttttaaacaat 29685196  T

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Target: chr8; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 57 - 344
Target Start/End: Complemental strand, 29688635 - 29688327
Alignment:
Q  57 tactttaattttgaaaatataaatatacatcataattctttccnnnnnnnta--tacttcataattattctcttgtgattccgcgttcagtttttaataa 154  Q
    ||||||||||||||||| |||||| ||||||||||||||||||        |  || ||||||||| ||||||||  |||| || ||||||| |||||||    
T  29688635 tactttaattttgaaaacataaatttacatcataattctttccaaaaaaaaaaatatttcataattgttctcttggcattctgcattcagttcttaataa 29688536  T
Q  155 tattcattgtggataaaactttttcaacaattatagttgtcacacaaacacacacagaaa--------------------actctaaaagaaaatatatc 234  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| | |                    |||||||||| |||||||||    
T  29688535 tattcattgtggagaaaactctttcaacaattatagttgtcacacacacacacacatatatatatatatatatattaagaactctaaaaggaaatatatc 29688436  T
Q  235 aatgagtgaacaacatattttcttgtctccactaacgttatagaaaagattgttatgtacataaaataagaaaatactaacaaacacctttaggaaattt 334  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| |  |||||||| ||||    
T  29688435 aatgagtgaacaacatatttccttgtctccactaacgttatag-aaatattgttatgtatataaaataagaaaatgctaacaagcgtctttaggacattt 29688337  T
Q  335 tttaaacaat 344  Q
    ||||| ||||    
T  29688336 tttaagcaat 29688327  T

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Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 37647120 - 37647264
Alignment:
Q  57 tactttaattttgaaaatataaatatacatcataattctttccnnnnnnn-tatacttcataattattctcttgtgattccgcgttcagtttttaataat 155  Q
    ||||||||||||||||| |||||||||||||||||||||||||        |||||||||||||| ||||||||  ||||||||||| ||| ||||||||    
T  37647120 tactttaattttgaaaacataaatatacatcataattctttccataaaaaatatacttcataattgttctcttggaattccgcgttcggttcttaataat 37647219  T
Q  156 attcattgtggataaaactttttcaacaattatagttgtcacaca 200  Q
    |||| | ||||| |||||| |||||||||||||||||||||||||    
T  37647220 attcgtcgtggagaaaactctttcaacaattatagttgtcacaca 37647264  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 381
Target Start/End: Original strand, 37546516 - 37546551
Alignment:
Q  346 atttagtttattacattttttaaatgataaaggaaa 381  Q
    ||||||||| ||||||||||||||||||||||||||    
T  37546516 atttagtttgttacattttttaaatgataaaggaaa 37546551  T

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Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 214 - 344
Target Start/End: Original strand, 6606790 - 6606918
Alignment:
Q  214 aactctaaaagaaaatatatcaatgagtgaacaacatattttcttgtctccactaacgttatagaaaagattgttatgtacat-aaaataagaaaatact 312  Q
    ||||||||||| ||||||| ||||||||  ||||||||||||||||||| |||||| ||||||| ||||||  ||||||| || ||||||||||||| ||    
T  6606790 aactctaaaagcaaatataccaatgagtacacaacatattttcttgtcttcactaatgttatag-aaagat--ttatgtatataaaaataagaaaatcct 6606886  T
Q  313 aacaaacacctttaggaaattttttaaacaat 344  Q
    || |||||||||||||| ||| ||||| ||||    
T  6606887 aataaacacctttaggacattctttaagcaat 6606918  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 6606637 - 6606728
Alignment:
Q  107 tatacttcataattattctcttgtgattccgcgttcagtttttaataatattcattgtggataaaactttttcaacaattatagttgtcaca 198  Q
    |||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| | |||||  |||||| ||||||||||||||||    
T  6606637 tatatttcataattgttctcttgtgatttcgcgttcagttcttaataatattcattgtgcagaaaacactttcaataattatagttgtcaca 6606728  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 1433865 - 1433824
Alignment:
Q  57 tactttaattttgaaaatataaatatacatcataattctttc 98  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  1433865 tactttaattttgaaaatataaattcacatcataattctttc 1433824  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 44039577 - 44039510
Alignment:
Q  107 tatacttcataattattctcttgtgattccgcgttcagtttttaataatattcattgtggataaaact 174  Q
    |||| ||||||||| |||||||| |||| | ||||| ||| |||||||||||||||||||| ||||||    
T  44039577 tataattcataattgttctcttgcgatttcacgttcggttcttaataatattcattgtggagaaaact 44039510  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 379
Target Start/End: Complemental strand, 9169772 - 9169739
Alignment:
Q  346 atttagtttattacattttttaaatgataaagga 379  Q
    ||||||||| ||||||||||||||||||||||||    
T  9169772 atttagtttgttacattttttaaatgataaagga 9169739  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 349 - 381
Target Start/End: Complemental strand, 45644081 - 45644049
Alignment:
Q  349 tagtttattacattttttaaatgataaaggaaa 381  Q
    |||||||||||||||||||||||||||||||||    
T  45644081 tagtttattacattttttaaatgataaaggaaa 45644049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 5256830 - 5256762
Alignment:
Q  60 tttaattttgaaaatataaatatacatcataattctttccnnnnnnntatacttcataattattctctt 128  Q
    |||||||||||||| |||||||||||| |||||| |||||       |||||||||||||| |||||||    
T  5256830 tttaattttgaaaacataaatatacattataattgtttccaaaaaaatatacttcataattgttctctt 5256762  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 49429261 - 49429298
Alignment:
Q  344 taatttagtttattacattttttaaatgataaaggaaa 381  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  49429261 taatctagtttgttacattttttaaatgataaaggaaa 49429298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 21098781 - 21098740
Alignment:
Q  58 actttaattttgaaaatataaatatacatcataattctttcc 99  Q
    |||||||||||||||| ||||||||||||| || ||||||||    
T  21098781 actttaattttgaaaacataaatatacatcgtagttctttcc 21098740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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