View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_10 (Length: 436)
Name: NF14399_low_10
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_10 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 21 - 429
Target Start/End: Original strand, 27244876 - 27245284
Alignment:
| Q |
21 |
tcccgatccattagatttgttcggaaaaacaacgatagacaataaaacatctcggaaatcttatgtacttaatttcacagtataataactaactctccta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27244876 |
tcccgatccattagatttgttcggaaaaacaacgatagacaataaaacatctcggaaatcttatgtacttaatttcacagtataataactaactctccta |
27244975 |
T |
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| Q |
121 |
caaattaggaaggtagttacaactgtttttctatctaaaagttagcttaagttgtgttaacttgtgctgcaagtaattgtggcatatggtgttcttcatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27244976 |
caaattaggaaggtagttacaactgtttttctatctaaaagttagcttaacttgtgttaacttgtgctgcaagtaattgtggcatatggtgttcttcatc |
27245075 |
T |
|
| Q |
221 |
cttatcacatagcaaacatgattcaaatacatgtgttatgcttcaagatcaattatgattatgcgataggtgtaaaaagtccatagagtcttatgaagaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27245076 |
cttatcacatagcaaacatgattcaaatacatgtgttatgcttcaagatcaattatgattatgcaataggtgtaaaaagtccatagagtcttatgaagaa |
27245175 |
T |
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| Q |
321 |
aaagcaatgatcctttagcatagaggtaaagcaatgttccatcaccatgccttgatttagtaagaattgtttcttttttaacggtactaaaatttgtttt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27245176 |
aaagcaatgatcctttagcatagaggtaaagcaatgttccatcaccatgccttgatttagtaagaattgtttcttttttaacagtactaaaatttgtttt |
27245275 |
T |
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| Q |
421 |
aatcctttg |
429 |
Q |
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||||||||| |
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| T |
27245276 |
aatcctttg |
27245284 |
T |
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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 2625355 - 2625296
Alignment:
| Q |
21 |
tcccgatccattagatttgttcggaaaaacaacgatagacaataaaacatctcggaaatc |
80 |
Q |
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||||||||||||| |||| || |||||| |||||||||||||||||||||||||||||| |
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| T |
2625355 |
tcccgatccattatatttatttggaaaataaacgatagacaataaaacatctcggaaatc |
2625296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 40896 - 40995
Alignment:
| Q |
335 |
ttagcatagaggtaaagcaatgttccatcaccatgccttgatttagt--aagaattgt---ttcttttttaacggtactaaaatttgttttaatcctttg |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||| |||||||||||||||||||||||||| |
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| T |
40896 |
ttagcatagaggtaaagcaatgttccatcaccatgccttgatttagtaaaagaattgttcctttttttttaacagtactaaaatttgttttaatcctttg |
40995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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