View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14399_low_11 (Length: 406)

Name: NF14399_low_11
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14399_low_11
NF14399_low_11
[»] chr7 (22 HSPs)
chr7 (2-387)||(5937110-5937495)
chr7 (4-68)||(22801749-22801813)
chr7 (36-136)||(25956464-25956563)
chr7 (9-68)||(1885565-1885624)
chr7 (24-68)||(2144547-2144591)
chr7 (1-68)||(48964070-48964138)
chr7 (27-77)||(2143853-2143902)
chr7 (3-77)||(12843033-12843107)
chr7 (18-68)||(35238192-35238242)
chr7 (23-68)||(37820086-37820131)
chr7 (8-76)||(9050133-9050201)
chr7 (18-61)||(38134421-38134464)
chr7 (31-74)||(44172892-44172935)
chr7 (8-74)||(9037719-9037785)
chr7 (18-68)||(44317294-44317344)
chr7 (31-68)||(37775996-37776033)
chr7 (20-68)||(13094721-13094769)
chr7 (5-62)||(18678134-18678193)
chr7 (3-63)||(18750862-18750922)
chr7 (1-61)||(29910692-29910752)
chr7 (4-68)||(31808517-31808580)
chr7 (24-68)||(43243084-43243128)
[»] chr2 (21 HSPs)
chr2 (2-138)||(43585943-43586079)
chr2 (4-68)||(13501086-13501150)
chr2 (4-66)||(11439782-11439844)
chr2 (14-61)||(18570969-18571016)
chr2 (10-68)||(14373435-14373493)
chr2 (26-68)||(14450803-14450845)
chr2 (18-68)||(18512150-18512200)
chr2 (27-68)||(24067263-24067304)
chr2 (25-68)||(24067758-24067801)
chr2 (30-68)||(8300227-8300265)
chr2 (18-68)||(10535767-10535817)
chr2 (5-59)||(14268750-14268804)
chr2 (2-68)||(33884036-33884102)
chr2 (10-68)||(44984658-44984716)
chr2 (24-77)||(37211884-37211937)
chr2 (18-59)||(40681983-40682024)
chr2 (3-68)||(42665594-42665659)
chr2 (31-63)||(13558774-13558806)
chr2 (16-68)||(16630794-16630846)
chr2 (18-62)||(26787812-26787856)
chr2 (8-68)||(44605147-44605207)
[»] chr8 (13 HSPs)
chr8 (2-68)||(26915248-26915314)
chr8 (4-96)||(42874509-42874601)
chr8 (6-68)||(27733836-27733898)
chr8 (3-68)||(24295145-24295210)
chr8 (2-68)||(10497824-10497890)
chr8 (18-68)||(34073986-34074036)
chr8 (3-67)||(22600515-22600579)
chr8 (23-60)||(6960692-6960729)
chr8 (27-68)||(31119097-31119138)
chr8 (5-58)||(14227210-14227263)
chr8 (3-50)||(4114229-4114276)
chr8 (1-59)||(29519179-29519237)
chr8 (23-68)||(2652345-2652389)
[»] chr4 (25 HSPs)
chr4 (18-68)||(44362667-44362717)
chr4 (3-68)||(37496690-37496755)
chr4 (23-77)||(13307883-13307937)
chr4 (2-63)||(43093538-43093599)
chr4 (2-68)||(11797636-11797705)
chr4 (18-77)||(13117430-13117489)
chr4 (4-61)||(33950123-33950180)
chr4 (18-58)||(28663493-28663533)
chr4 (18-61)||(18513256-18513299)
chr4 (21-68)||(20119949-20119996)
chr4 (18-61)||(34589721-34589764)
chr4 (37-68)||(47492399-47492430)
chr4 (26-68)||(10164862-10164904)
chr4 (2-64)||(10634975-10635037)
chr4 (24-77)||(13484030-13484084)
chr4 (4-78)||(20743277-20743350)
chr4 (8-61)||(43476790-43476844)
chr4 (31-68)||(683066-683103)
chr4 (31-68)||(9988707-9988744)
chr4 (3-68)||(16303274-16303339)
chr4 (9-61)||(5654606-5654658)
chr4 (31-63)||(8457939-8457971)
chr4 (28-68)||(22799901-22799941)
chr4 (33-61)||(40224513-40224541)
chr4 (3-59)||(44796979-44797035)
[»] chr1 (22 HSPs)
chr1 (3-68)||(24176805-24176871)
chr1 (9-68)||(40176595-40176654)
chr1 (1-68)||(40686766-40686833)
chr1 (3-63)||(14332395-14332454)
chr1 (3-66)||(24462280-24462343)
chr1 (7-68)||(12558874-12558938)
chr1 (27-68)||(18946042-18946083)
chr1 (3-68)||(28170368-28170432)
chr1 (9-61)||(3921659-3921711)
chr1 (3-59)||(6427336-6427392)
chr1 (6-77)||(31667414-31667485)
chr1 (3-49)||(22794105-22794151)
chr1 (2-68)||(26462653-26462719)
chr1 (28-77)||(7888106-7888155)
chr1 (31-68)||(8203835-8203872)
chr1 (9-50)||(24806937-24806978)
chr1 (4-77)||(38078660-38078733)
chr1 (3-68)||(48450595-48450660)
chr1 (18-58)||(6895111-6895151)
chr1 (31-59)||(41017421-41017449)
chr1 (18-78)||(42004946-42005005)
chr1 (4-68)||(43328454-43328518)
[»] scaffold0024 (1 HSPs)
scaffold0024 (3-68)||(18116-18181)
[»] chr6 (24 HSPs)
chr6 (1-68)||(10031554-10031621)
chr6 (22-77)||(6751881-6751936)
chr6 (9-68)||(19369809-19369868)
chr6 (12-68)||(5579649-5579705)
chr6 (4-63)||(31430267-31430326)
chr6 (3-109)||(7265560-7265666)
chr6 (3-68)||(20809629-20809694)
chr6 (6-68)||(31327803-31327866)
chr6 (4-63)||(34868170-34868229)
chr6 (3-59)||(29959164-29959217)
chr6 (3-68)||(10760850-10760914)
chr6 (18-130)||(1334662-1334774)
chr6 (3-63)||(8623191-8623251)
chr6 (4-68)||(16503662-16503726)
chr6 (3-59)||(17168480-17168536)
chr6 (4-68)||(22745945-22746008)
chr6 (3-61)||(13211296-13211354)
chr6 (23-98)||(26402658-26402735)
chr6 (31-68)||(10157998-10158035)
chr6 (4-57)||(17422274-17422327)
chr6 (3-68)||(21395316-21395380)
chr6 (4-68)||(4859121-4859185)
chr6 (20-68)||(16516944-16516992)
chr6 (10-50)||(32297976-32298016)
[»] chr5 (21 HSPs)
chr5 (3-61)||(26205775-26205833)
chr5 (1-66)||(30080511-30080576)
chr5 (9-54)||(309150-309195)
chr5 (2-68)||(19167584-19167651)
chr5 (18-68)||(21319953-21320003)
chr5 (3-61)||(32444752-32444810)
chr5 (9-66)||(7621245-7621302)
chr5 (19-68)||(38784808-38784857)
chr5 (8-61)||(43208289-43208342)
chr5 (9-61)||(16881128-16881180)
chr5 (4-68)||(24906309-24906373)
chr5 (18-61)||(2577195-2577238)
chr5 (9-68)||(10010546-10010605)
chr5 (10-61)||(11596470-11596521)
chr5 (14-53)||(18919045-18919084)
chr5 (24-63)||(42192283-42192322)
chr5 (18-64)||(9031937-9031983)
chr5 (26-68)||(16207599-16207641)
chr5 (4-61)||(2039864-2039921)
chr5 (3-59)||(5467995-5468051)
chr5 (9-57)||(28296320-28296368)
[»] chr3 (15 HSPs)
chr3 (11-68)||(49179723-49179780)
chr3 (9-63)||(34409355-34409409)
chr3 (22-64)||(14338495-14338537)
chr3 (14-78)||(27903629-27903692)
chr3 (31-69)||(17568690-17568728)
chr3 (18-83)||(6984765-6984830)
chr3 (31-76)||(19323448-19323493)
chr3 (13-66)||(42076759-42076812)
chr3 (22-63)||(52558141-52558182)
chr3 (35-91)||(1502592-1502648)
chr3 (3-47)||(3180793-3180837)
chr3 (6-74)||(4946206-4946274)
chr3 (9-61)||(25074781-25074833)
chr3 (3-59)||(41319327-41319383)
chr3 (31-63)||(42667634-42667666)
[»] scaffold0314 (1 HSPs)
scaffold0314 (17-68)||(8948-8999)
[»] scaffold0504 (1 HSPs)
scaffold0504 (23-68)||(8705-8750)
[»] scaffold0007 (1 HSPs)
scaffold0007 (3-68)||(225276-225341)
[»] scaffold0004 (1 HSPs)
scaffold0004 (3-68)||(92793-92858)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 2 - 387
Target Start/End: Complemental strand, 5937495 - 5937110
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccaga 101  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  5937495 tgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacaccaga 5937396  T
Q  102 atacgccttcaatatgaagtgtacgtgcaatagaggttctccctcttcaatgattcaattttcaaacatgatagtaattaaacagtactgctctttttca 201  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5937395 atacgccttcaatatgaagtgtccgtgcaatagagattctccctcttcaatgattcaattttcaaacatgatagtaattaaacagtactgctctttttca 5937296  T
Q  202 atttagctcttccctttgtctcatttgaagccactaagaatcttgaatcaaagtacagcattttttcatcaggggtacttcactaattgtctactcactt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5937295 atttagctcttccctttgtctcatttgaagccactaagaatcttgaatcaaagtacagcattttttcatcaggggtacttcacaaattgtctactcactt 5937196  T
Q  302 tcattctactgtatactattcattcattattaggaccatctacaaaggagtggacttaaaaattaaggccactttgtatatagcat 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5937195 tcattctactgtatactattcattcattattaggaccatctacaaaggagtggacttaaaaattaaggccactttgtatatagcat 5937110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 22801813 - 22801749
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||||    
T  22801813 acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgt 22801749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 25956464 - 25956563
Alignment:
Q  36 gaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccagaatacgccttcaatatgaagtgtacgtgcaataga 135  Q
    ||||||||||||||| |||||||||||||||||  ||||||| ||| ||||| |||||||| | | | |||||||||||  ||||||| |||||||||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatcagaagtgtccgtgcaataga 25956562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 1885565 - 1885624
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||| || |||| ||||||||||||| |||||||||||||| |||||||||||||||||    
T  1885565 gacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgt 1885624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 2144591 - 2144547
Alignment:
Q  24 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgt 2144547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 48964138 - 48964070
Alignment:
Q  1 atgacactgacacgtcaac-accgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||| ||||||||| | || ||||||||| |||||||||||||||||| ||| |||||||||||||    
T  48964138 atgacacagacacgtcagccacagataaaattgtgagaaaatgacataattcaatttaatcacaagtgt 48964070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 2143902 - 2143853
Alignment:
Q  27 aaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcacatgtg-atgtgtcgg 2143853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 12843107 - 12843033
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    |||||||||||||||| |||| ||  | |||||||||||||||||||| ||| |||||||| |||| || |||||    
T  12843107 gacactgacacgtcaagaccggtattaatttgagaaaatgacataattgaatataatcacacgtgtctgggtcgg 12843033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 35238242 - 35238192
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||| |||||||||||||||||||||| ||| |||||||| ||||    
T  35238242 acaccgataatattttgagaaaatgacataattcaatataatcacacgtgt 35238192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 37820086 - 37820131
Alignment:
Q  23 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||||    
T  37820086 gataaaattttgaaaaaataacataatttaatgtaatcgcaagtgt 37820131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 9050201 - 9050133
Alignment:
Q  8 tgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcg 76  Q
    ||||||||| |||  ||||||||||||| ||||||||||| || ||| |||||||| |||| |||||||    
T  9050201 tgacacgtcgacatagataaaattttgaaaaaatgacatagttcaatataatcacatgtgtctgtgtcg 9050133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 38134464 - 38134421
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||| | |||||||||||||||||||| ||||||||||    
T  38134464 acaccgataataatttgagaaaatgacataattcaatgtaatca 38134421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 44172935 - 44172892
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcacaagtgtatgtgt 74  Q
    |||||||||||||||||||| |||||||||||| |||| |||||    
T  44172935 tttgagaaaatgacataattcaatgtaatcacatgtgtttgtgt 44172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 9037785 - 9037719
Alignment:
Q  8 tgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgt 74  Q
    |||||||||||||  ||||||||||||| ||||||| ||| || ||| |||||||| |||| |||||    
T  9037785 tgacacgtcaacatagataaaattttgaaaaaatgatatagttcaatataatcacatgtgtctgtgt 9037719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 44317344 - 44317294
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||| ||||||||||| | |||||||||||||| |||||||||| ||||||    
T  44317344 acactgataaaattttaaaaaaatgacataattcaatgtaatcataagtgt 44317294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 37775996 - 37776033
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  37775996 tttgagaaaatgacataattaaatgtaatcacatgtgt 37776033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 13094769 - 13094721
Alignment:
Q  20 accgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||||  | |||||| ||||||||||| |||||    
T  13094769 accgataaaattttgagaaaactatataattcaatgtaatcactagtgt 13094721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 18678134 - 18678193
Alignment:
Q  5 cactgacacgtcaacaccgataaaat--tttgagaaaatgacataatttaatgtaatcac 62  Q
    |||||||||||||||||   ||||||  |||||||||||||||||||| ||| |||||||    
T  18678134 cactgacacgtcaacactagtaaaatattttgagaaaatgacataattcaatataatcac 18678193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 18750862 - 18750922
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    ||||||||||| || ||| || ||| | ||| |||||||||||||||| ||||||||||||    
T  18750862 gacactgacacatcgacaacggtaataatttaagaaaatgacataattgaatgtaatcaca 18750922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29910692 - 29910752
Alignment:
Q  1 atgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||||||||  |||||| |  || ||||||||||||||| |||| ||||||||||    
T  29910692 atgacactgacacgtggacaccggtggaaatttgagaaaatgacagaattgaatgtaatca 29910752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 31808580 - 31808517
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||  ||||||||| | ||||||||||||||| || | |||||||||||| ||||    
T  31808580 acactgacacgtcg-caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgt 31808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 43243084 - 43243128
Alignment:
Q  24 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||| ||||| |||| ||||||||||||||||| ||||||||    
T  43243084 ataaaatgttgaggaaataacataatttaatgtaattacaagtgt 43243128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 43586079 - 43585943
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccaga 101  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||  ||| |||||  |     
T  43586079 tgacactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatgg 43585980  T
Q  102 atacgccttcaatatgaagtgtacgtgcaatagaggt 138  Q
    | || ||||||||  ||||||| ||||||| ||||||    
T  43585979 acacaccttcaatcagaagtgttcgtgcaacagaggt 43585943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 13501150 - 13501086
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||| ||||| || || ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  13501150 acacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgt 13501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 11439782 - 11439844
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagt 66  Q
    ||||||||||||||| | |||||||||| ||||||||| |||||||| | |||||||||||||    
T  11439782 acactgacacgtcaaaatcgataaaattatgagaaaataacataattcagtgtaatcacaagt 11439844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 18570969 - 18571016
Alignment:
Q  14 gtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||||    
T  18570969 gtcaacaccgataataatttgagaaaatgacataattcaatgtaatca 18571016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 14373493 - 14373435
Alignment:
Q  10 acacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||||| ||||||||||||   |||||||||||| |||||||||||| ||||    
T  14373493 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgt 14373435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 14450845 - 14450803
Alignment:
Q  26 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgt 14450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 18512200 - 18512150
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||||||| | |||||| |||||||||||| ||||    
T  18512200 acaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgt 18512150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 24067263 - 24067304
Alignment:
Q  27 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgt 24067304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 24067758 - 24067801
Alignment:
Q  25 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||    
T  24067758 taaaattttgagaaaatgtcataattaaatgaaatcacaagtgt 24067801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 8300265 - 8300227
Alignment:
Q  30 ttttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  8300265 ttttgagaaaatgacataatttagtgtaatcataagtgt 8300227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 10535817 - 10535767
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||| | |||||||||||||||||||| | |||||||| ||||||    
T  10535817 acaccgataataatttgagaaaatgacataattcagtgtaatcataagtgt 10535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 14268804 - 14268750
Alignment:
Q  5 cactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    ||||||||||||||||||| ||| | |||||||||||||| ||||| || |||||    
T  14268804 cactgacacgtcaacaccggtaataatttgagaaaatgacttaattgaacgtaat 14268750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 33884036 - 33884102
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||| ||||| || | |||||||||||| |||||||||||||| ||| | |||||| ||||||||    
T  33884036 tgacacagacacatcgataccgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgt 33884102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 44984716 - 44984658
Alignment:
Q  10 acacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||| ||||| || ||||||||| ||||||| |||||| ||||| |||||||||||    
T  44984716 acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgt 44984658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 37211937 - 37211884
Alignment:
Q  24 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    ||||||||| |||||||||||| |||| |||||||| |||||||| | ||||||    
T  37211937 ataaaatttcgagaaaatgacacaattcaatgtaattacaagtgtctatgtcgg 37211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 40681983 - 40682024
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    |||||||||| | |||||||||||||||||||| ||||||||    
T  40681983 acaccgataataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 42665594 - 42665659
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||| ||||||||| | | |||||||||||||| || ||||||| ||| |||||||||||| ||||    
T  42665594 gacattgacacgtcgatatcgataaaattttgaaaagatgacatgattcaatgtaatcacatgtgt 42665659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 13558806 - 13558774
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcaca 63  Q
    ||||||||||||||||||||||||| |||||||    
T  13558806 tttgagaaaatgacataatttaatgcaatcaca 13558774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 16630794 - 16630846
Alignment:
Q  16 caacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||| | ||| |||||||||||||||| ||| |||||||| ||||    
T  16630794 caacaccgataataatttaagaaaatgacataattcaatttaatcacatgtgt 16630846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 26787856 - 26787812
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcac 62  Q
    ||||| |||||| ||||||||||||||||||||  ||||||||||    
T  26787856 acaccaataaaaatttgagaaaatgacataattcgatgtaatcac 26787812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 44605207 - 44605147
Alignment:
Q  8 tgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||| || |||| | ||||||||||| |||||||| |||||||| ||| ||||    
T  44605207 tgacacgtcaacgccaataataatttgagaaaataacataattcaatgtaattacatgtgt 44605147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 26915314 - 26915248
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26915314 tgacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 26915248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 42874509 - 42874601
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggaca 96  Q
    |||| |||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||||  |||| || ||||| ||| ||||||||    
T  42874509 acacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacacaacacatgtcggaca 42874601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 27733836 - 27733898
Alignment:
Q  6 actgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  27733836 actgacaagccaacaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 24295210 - 24295145
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||| ||| ||| |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  24295210 gacactgacatgtcgacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgt 24295145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 10497890 - 10497824
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||| |||||| | |||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  10497890 tgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgt 10497824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 34074036 - 34073986
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  34074036 acaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgt 34073986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 22600515 - 22600579
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtg 67  Q
    ||||||||||| |||||||| |||||||||  |||||||||||||||| ||| ||||||||||||    
T  22600515 gacactgacacatcaacaccaataaaatttaaagaaaatgacataattcaatataatcacaagtg 22600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 6960729 - 6960692
Alignment:
Q  23 gataaaattttgagaaaatgacataatttaatgtaatc 60  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6960729 gataaaattttgagaaaatgacataatttaatgtaatc 6960692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 31119097 - 31119138
Alignment:
Q  27 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgt 31119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 14227210 - 14227263
Alignment:
Q  5 cactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaa 58  Q
    |||||||||||||||||| |||| | ||||||||||| |||||||| |||||||    
T  14227210 cactgacacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 4114276 - 4114229
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatt 50  Q
    ||||||||||||||||  ||||||| | ||||||||||||||||||||    
T  4114276 gacactgacacgtcaatgccgataataatttgagaaaatgacataatt 4114229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 29519179 - 29519237
Alignment:
Q  1 atgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    ||||||||||||||||||||||||||| | ||| | ||||| | |||||| ||||||||    
T  29519179 atgacactgacacgtcaacaccgataataattttaaaaaatcatataattcaatgtaat 29519237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 2652345 - 2652389
Alignment:
Q  23 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||    
T  2652345 gataaattttttagaaaatgacataa-ttaatgtaatcacaagtgt 2652389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 44362667 - 44362717
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44362667 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44362717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 37496690 - 37496755
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||  ||||||||||  ||||||||||||||||||||| |||||||||||||||||    
T  37496690 gacactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgt 37496755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 13307883 - 13307937
Alignment:
Q  23 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcgg 13307937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 43093599 - 43093538
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    ||||||||||||||||||||| |||| | ||||| |||||| ||||||| ||||||||||||    
T  43093599 tgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcaca 43093538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 11797705 - 11797636
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaa---tgacataatttaatgtaatcacaagtgt 68  Q
    |||||| | ||| |||||||| |||||||||||| ||||   ||||||||||||||||||||||||||||    
T  11797705 tgacacgggcacatcaacaccaataaaattttgaaaaaaaaatgacataatttaatgtaatcacaagtgt 11797636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 13117430 - 13117489
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    ||||| ||||||||| |||||||||||| |||| |||||||||||||||||  |||||||    
T  13117430 acaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgtcgg 13117489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 33950123 - 33950180
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||| ||||| ||| ||| | ||||||||||| |||||||||||||||||||    
T  33950123 acactgacacttcaacgccgctaataatttgagaaaatcacataatttaatgtaatca 33950180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 28663493 - 28663533
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaa 58  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  28663493 acacggataaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 18513299 - 18513256
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||| | |||||||||||||||||||| ||||||||||    
T  18513299 acaccgataataatttgagaaaatgacataattcaatgtaatca 18513256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 20119949 - 20119996
Alignment:
Q  21 ccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||| | ||||||||||||| ||||||||||||||||||| ||||    
T  20119949 ccgataataatttgagaaaatgaaataatttaatgtaatcacatgtgt 20119996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 34589764 - 34589721
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||| | |||||||||||||||||||| ||||||||||    
T  34589764 acaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 47492399 - 47492430
Alignment:
Q  37 aaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||||||||||||||||||||||||    
T  47492399 aaaatgacataatttaatgtaatcacaagtgt 47492430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 10164904 - 10164862
Alignment:
Q  26 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 10164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 10634975 - 10635037
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaa 64  Q
    |||||| | |||||| | || ||||||||||||| |||||||||||||| ||||| |||||||    
T  10634975 tgacacgggcacgtcgatactgataaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 13484030 - 13484084
Alignment:
Q  24 ataaaattttgagaaaatgacataatt-taatgtaatcacaagtgtatgtgtcgg 77  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||  |||||||    
T  13484030 ataaaattttgagaaaataacataattcaaatgtaatcacaagtgtcagtgtcgg 13484084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 20743350 - 20743277
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggt 78  Q
    ||||||||||| | |||| ||||| | |||||||||||||||||||| | |||||||| | |||| |||||||||    
T  20743350 acactgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgt-tgtgtcggt 20743277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 43476790 - 43476844
Alignment:
Q  8 tgacacgtcaacaccgataa-aattttgagaaaatgacataatttaatgtaatca 61  Q
    ||||||||| ||| | |||| |||||||||| |||||||||||||||||||||||    
T  43476790 tgacacgtcgacatcaataataattttgagagaatgacataatttaatgtaatca 43476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 683066 - 683103
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  683066 tttgagaaaatgacataattgaatgtaatcacatgtgt 683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 9988744 - 9988707
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  9988744 tttgagaaaatgacataattgaatgtaatcacatgtgt 9988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 16303339 - 16303274
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||| | |||  ||||| ||||||| ||||||| |||||||| |||||| ||||||||    
T  16303339 gacactgacacgccgacaaagataatattttgaaaaaatgatataatttagtgtaattacaagtgt 16303274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 5654658 - 5654606
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||| ||| |||| ||||| | |||||||||||||||||||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 8457939 - 8457971
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcaca 63  Q
    |||||||||||||||||||| ||||||||||||    
T  8457939 tttgagaaaatgacataattgaatgtaatcaca 8457971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 22799941 - 22799901
Alignment:
Q  28 aattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  22799941 aatttttagaaaatgacataattcaatgtaatcacacgtgt 22799901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 40224541 - 40224513
Alignment:
Q  33 tgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||||||||||||||||||||||    
T  40224541 tgagaaaatgacataatttaatgtaatca 40224513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 44797035 - 44796979
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    ||||| |||| ||||||||||| || | ||||||||||| |||||||| ||||||||    
T  44797035 gacacagacatgtcaacaccgacaataatttgagaaaataacataattcaatgtaat 44796979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 24176805 - 24176871
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgag-aaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  24176805 gacattgacacgtcaacaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgt 24176871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 40176595 - 40176654
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||    
T  40176595 gacacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgt 40176654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40686833 - 40686766
Alignment:
Q  1 atgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||| ||| |||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  40686833 atgacactgacacgtcgacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgt 40686766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 14332395 - 14332454
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    |||||| ||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||||    
T  14332395 gacactaacaagtcgacaccgataaaattt-gagaaaatgacataattcaatgtaatcaca 14332454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 24462343 - 24462280
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagt 66  Q
    ||||| || ||||| |||| ||| ||||||||| |||||||||||||| |||||||||||||||    
T  24462343 gacacagatacgtcgacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 12558938 - 12558874
Alignment:
Q  7 ctgacacgtcaacaccgataaaattttgagaaaatgaca---taatttaatgtaatcacaagtgt 68  Q
    ||||||||||| ||||||||||||||||| |||||||||   || || |||||||||||||||||    
T  12558938 ctgacacgtcagcaccgataaaattttgataaaatgacatagtagttaaatgtaatcacaagtgt 12558874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 18946083 - 18946042
Alignment:
Q  27 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgt 18946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 28170368 - 28170432
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||| |||  ||||| |||||||||||| |||||||||||||| |||||||| ||||||||    
T  28170368 gacactgacgcgtggacaccaataaaattttga-aaaatgacataattcaatgtaataacaagtgt 28170432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 3921659 - 3921711
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||||| | |||| | |||||||||||||||||||| ||||||||||    
T  3921659 gacacgtcaacatcaataataatttgagaaaatgacataattcaatgtaatca 3921711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 6427336 - 6427392
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    |||||||||||| |||||||| ||| | ||||||||||| |||||||| ||||||||    
T  6427336 gacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaat 6427392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 31667414 - 31667485
Alignment:
Q  6 actgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    ||||||| |||||||| | ||| | ||| |||||||||||||||| |||||||||||| ||||  |||||||    
T  31667414 actgacatgtcaacactggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcgg 31667485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 22794151 - 22794105
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataat 49  Q
    ||||||||||||||||||| ||||| | ||||| |||||||||||||    
T  22794151 gacactgacacgtcaacacggataataatttgaaaaaatgacataat 22794105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 26462719 - 26462653
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||| |||||||| |||| ||||| | ||| ||||||||| |||||| |||||||||||| ||||    
T  26462719 tgacaccgacacgtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgt 26462653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 7888106 - 7888155
Alignment:
Q  28 aattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    |||||||||||| |  |||||||||||||||||||||||||  |||||||    
T  7888106 aattttgagaaactcgcataatttaatgtaatcacaagtgtcggtgtcgg 7888155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 8203835 - 8203872
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||| | |||||||||||||||||    
T  8203835 tttgagaaaatgacataagtgaatgtaatcacaagtgt 8203872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 24806937 - 24806978
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatt 50  Q
    ||||||||||||  ||||||||||||||||||| ||||||||    
T  24806937 gacacgtcaacatggataaaattttgagaaaataacataatt 24806978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 38078733 - 38078660
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    ||||||||||||| |||| | ||| | ||||| ||||| |||||||| |||||||| ||||||||  |||||||    
T  38078733 acactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcgg 38078660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 48450660 - 48450595
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||| |||||| | ||| | ||||| ||||| |||||||||| |||||| ||||||||    
T  48450660 gacactgacacgccaacacagctaataatttgaaaaaataacataatttagtgtaattacaagtgt 48450595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 6895111 - 6895151
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaa 58  Q
    ||||||| |||||||| ||||||||||||||| ||||||||    
T  6895111 acaccgacaaaattttaagaaaatgacataatgtaatgtaa 6895151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 41017449 - 41017421
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaat 59  Q
    |||||||||||||||||||||||||||||    
T  41017449 tttgagaaaatgacataatttaatgtaat 41017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 42005005 - 42004946
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggt 78  Q
    |||| ||||| | |||||||||||||||||||||| |||||||| | |||| |||||||||    
T  42005005 acacggataataatttgagaaaatgacataatttagtgtaatcataggtgt-tgtgtcggt 42004946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 43328454 - 43328518
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||||  ||||  |||| | ||||||||||||| |||||||||||||| |||| ||||    
T  43328454 acactgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgt 43328518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 18181 - 18116
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| |||||||    
T  18181 gacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgt 18116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 10031554 - 10031621
Alignment:
Q  1 atgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||  ||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10031554 atgacacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 6751936 - 6751881
Alignment:
Q  22 cgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 77  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgg 6751881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 19369809 - 19369868
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||  |||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  19369809 gacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 19369868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 5579649 - 5579705
Alignment:
Q  12 acgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||| |||||||||||||||||||||||||||||| || |||||| ||||||||||    
T  5579649 acgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 5579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 31430267 - 31430326
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  31430267 acacttacatgtcaacaccaataaaattttgagaaaatgacatgattaaatgtaatcaca 31430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 7265666 - 7265560
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccagaa 102  Q
    |||||||||||| |||||||| ||| | ||||||||||| |||||||| | |||||| | | ||||  ||||||| ||||||||| ||| |||||| |||    
T  7265666 gacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacacaatacatgtccgacaccggaa 7265567  T
Q  103 tacgcct 109  Q
    || ||||    
T  7265566 tatgcct 7265560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 20809629 - 20809694
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||| |||||| |||||||||||||||||| ||| | ||||||| ||| ||||||||||||||    
T  20809629 gacactgtcacgtcgacaccgataaaattttgaaaaattaacataatctaaggtaatcacaagtgt 20809694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 31327803 - 31327866
Alignment:
Q  6 actgacacgtcaacaccgataaaa-ttttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||||||| | |||||| |||| ||||||| ||||||||||||| ||||||||||||    
T  31327803 actgacacgtcaacatcaataaaaattttaagaaaattacataatttaatgcaatcacaagtgt 31327866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 34868229 - 34868170
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    ||||| ||||||| |||||||||||||||||||| |||  ||||||| ||||||||||||    
T  34868229 acactaacacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatcaca 34868170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 29959164 - 29959217
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    ||||| |||||||||||   |||||||||||||||||||||||||||| ||||||||    
T  29959164 gacaccgacacgtcaac---gataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 10760914 - 10760850
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||| |||| ||||| | |||||||||||||||| ||| |||||||||||| ||||    
T  10760914 gacactgacacgtcgacactgataataatttgagaaaatgacat-attgaatgtaatcacacgtgt 10760850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 1334662 - 1334774
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccagaatacgccttcaatatg 117  Q
    |||| ||||||||||||| |||| ||||||||| ||||||||||||| |||  ||||||  ||| || |  |||| ||||||| | || ||||||||  |    
T  1334662 acacggataaaattttgaaaaaaggacataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcag 1334761  T
Q  118 aagtgtacgtgca 130  Q
    |||||| ||||||    
T  1334762 aagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 8623191 - 8623251
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    |||||||||||||  |||||||||| | ||| |||||||||||| ||| ||||||||||||    
T  8623191 gacactgacacgttgacaccgataacaattttagaaaatgacatcattgaatgtaatcaca 8623251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 16503662 - 16503726
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||| |||  |||||||||||||||||||||  | |||||| ||||||||||| |||||    
T  16503662 acactgacacttcataaccgataaaattttgagaaaactatataattcaatgtaatcactagtgt 16503726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 17168536 - 17168480
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    |||||||||||| |||||| ||||| | ||||||||||||| |||||||| ||||||    
T  17168536 gacactgacacgccaacactgataataatttgagaaaatgatataatttagtgtaat 17168480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 22745945 - 22746008
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||| || |||| ||||||||||||||||||||  ||| || |||||||||||||||||    
T  22745945 acactgacacatcgacac-gataaaattttgagaaaatgttatatttcaatgtaatcacaagtgt 22746008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 13211354 - 13211296
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    ||||| |||||||| |||  ||||| | |||||||||||||||||||||||| ||||||    
T  13211354 gacaccgacacgtcgacattgataataatttgagaaaatgacataatttaatataatca 13211296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 26402735 - 26402658
Alignment:
Q  23 gataaaattttgagaaaa--tgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacacc 98  Q
    ||||||||||||| ||||  |||||||||| | |||||||||||||||  ||||||| ||| ||||| || |||||||    
T  26402735 gataaaattttgaaaaaaaatgacataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttggacacc 26402658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 10157998 - 10158035
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgt 10158035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 17422327 - 17422274
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgta 57  Q
    ||||| ||||||| |||||||||| | ||||||||||||| |||||| ||||||    
T  17422327 acactaacacgtcgacaccgataataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 21395380 - 21395316
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||| |||||| |||||||| ||| | ||||||||||| |||||||||| |||||| ||||||||    
T  21395380 gacaccgacacgccaacaccgctaataatttgagaaaat-acataatttagtgtaattacaagtgt 21395316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 4859185 - 4859121
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||| ||| ||| ||||| |||| | |||||||||||||||||||  |||||||||||| ||||    
T  4859185 acactaacatgtcgacaccaataataatttgagaaaatgacataatccaatgtaatcacacgtgt 4859121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 16516944 - 16516992
Alignment:
Q  20 accgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||||  | |||||| ||||||||||| |||||    
T  16516944 accgataaaattttgagaaaactatataattcaatgtaatcactagtgt 16516992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 32297976 - 32298016
Alignment:
Q  10 acacgtcaacaccgataaaattttgagaaaatgacataatt 50  Q
    ||||||| |||||||| ||||||||||||||||| ||||||    
T  32297976 acacgtcgacaccgatcaaattttgagaaaatgatataatt 32298016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 26205833 - 26205775
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||    
T  26205833 gacactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatca 26205775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30080576 - 30080511
Alignment:
Q  1 atgacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagt 66  Q
    ||||||| || | ||| |||| |||||||||||||||||||||||||||| |||||||||||||||    
T  30080576 atgacacggaaatgtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 309150 - 309195
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaat 54  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  309150 gacacgtcgacaccgataaaattttgagaaaatgacataatgtaat 309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 19167651 - 19167584
Alignment:
Q  2 tgacactgacacgtcaacaccgataaaattttgagaaaa-tgacataatttaatgtaatcacaagtgt 68  Q
    |||||| |||||||  |||||||||||||||||| |||| ||||| |||| |||||||||||||||||    
T  19167651 tgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgt 19167584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 21320003 - 21319953
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||| ||||||||||||| ||||||| |||||| |||||||||||||||||    
T  21320003 acacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtgt 21319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 32444752 - 32444810
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    ||||||||||||||||||||  ||| | |||||||| ||||||||||| ||||||||||    
T  32444752 gacactgacacgtcaacaccattaacaatttgagaagatgacataattcaatgtaatca 32444810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 7621302 - 7621245
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagt 66  Q
    |||||||| |||| ||||||||||  | ||| ||||||||||||||||||||||||||    
T  7621302 gacacgtcgacacagataaaatttaaaaaaattgacataatttaatgtaatcacaagt 7621245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 38784808 - 38784857
Alignment:
Q  19 caccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||||| ||| ||||||| |||||| |||||||||||||||||    
T  38784808 caccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgt 38784857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 43208342 - 43208289
Alignment:
Q  8 tgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||| ||||||||||||  | |||||||||||||||||||| ||||||||||    
T  43208342 tgacacatcaacaccgatagtaatttgagaaaatgacataattcaatgtaatca 43208289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 16881128 - 16881180
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||| ||| |||| | ||||| |||||||||||||||||||||||||    
T  16881128 gacacgtcaatacccataataatttgaaaaaatgacataatttaatgtaatca 16881180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 24906373 - 24906309
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||||||| |||||| ||||| | ||||| |||||||||||||| | |||||| ||||||||    
T  24906373 acactgacacgccaacacagataataatttgaaaaaatgacataattcagtgtaattacaagtgt 24906309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 2577238 - 2577195
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||||||| | |||||||||||||||||||||| ||||||||    
T  2577238 acaccgataataatttgagaaaatgacataatttagtgtaatca 2577195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 10010546 - 10010605
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||| |||||||  |||||||||||| |||||||||||||| | |||||||||| ||||    
T  10010546 gacacctcaacactaataaaattttgaaaaaatgacataattcattgtaatcacatgtgt 10010605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 11596521 - 11596470
Alignment:
Q  10 acacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    ||||||| | |||||||| | |||||||||||||||||||| ||||||||||    
T  11596521 acacgtcgataccgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 18919084 - 18919045
Alignment:
Q  14 gtcaacaccgataaaattttgagaaaatgacataatttaa 53  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  18919084 gtcaacaccgataataatttgagaaaatgacataatttaa 18919045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 42192283 - 42192322
Alignment:
Q  24 ataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  42192283 ataaaattttgagacaatgacataattcaatgtaatcaca 42192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 9031983 - 9031937
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaa 64  Q
    ||||||||||| ||||||| ||||||||||||| ||| |||||||||    
T  9031983 acaccgataaatttttgaggaaatgacataattcaatctaatcacaa 9031937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 16207641 - 16207599
Alignment:
Q  26 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    ||||||| |||||| |||||||||| |||||||||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtgt 16207599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 2039921 - 2039864
Alignment:
Q  4 acactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||| |||||||| |||||| ||| | |||||||||||||||| ||| ||||||||||    
T  2039921 acacggacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatca 2039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 5468051 - 5467995
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    |||||||||||||||| |||||||| | ||||| ||||| |||||||| | ||||||    
T  5468051 gacactgacacgtcaataccgataataatttgataaaatcacataattcagtgtaat 5467995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 28296320 - 28296368
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgta 57  Q
    |||| ||| |||||||||| | |||||||||||||||||||| ||||||    
T  28296320 gacaagtcgacaccgataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 49179780 - 49179723
Alignment:
Q  11 cacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||| |||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  49179780 cacgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgt 49179723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 34409409 - 34409355
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    ||||||||||||||||||| | || ||||||||||||||||| ||||||||||||    
T  34409409 gacacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatcaca 34409355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 14338537 - 14338495
Alignment:
Q  22 cgataaaattttgagaaaatgacataatttaatgtaatcacaa 64  Q
    |||||||||||||| |||||||||||||| |||||||||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaa 14338495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 27903629 - 27903692
Alignment:
Q  14 gtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggt 78  Q
    |||||||| ||||| | |||||||||| || ||||||||||||||||| |||||| |||||||||    
T  27903629 gtcaacacagataataatttgagaaaacgatataatttaatgtaatcataagtgt-tgtgtcggt 27903692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 17568728 - 17568690
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcacaagtgta 69  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  17568728 tttgagaaaattacataatttaatgtaattacaagtgta 17568690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 6984765 - 6984830
Alignment:
Q  18 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaa 83  Q
    ||||| |||||||||||||||||| ||| |||| ||| |||||||||| ||  ||||||| |||||    
T  6984765 acaccaataaaattttgagaaaataacacaattcaatataatcacaagagtcggtgtcggacacaa 6984830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 19323493 - 19323448
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcg 76  Q
    |||||||||||||||||||| ||| |||||||| ||||| ||||||    
T  19323493 tttgagaaaatgacataattgaatttaatcacatgtgtaagtgtcg 19323448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 42076812 - 42076759
Alignment:
Q  13 cgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagt 66  Q
    ||||||| | ||||||||| || ||||||||| ||||| |||||||||||||||    
T  42076812 cgtcaacgctgataaaattgtgggaaaatgacctaattcaatgtaatcacaagt 42076759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 52558182 - 52558141
Alignment:
Q  22 cgataaaattttgagaaaatgacataatttaatgtaatcaca 63  Q
    |||||||| |||||||||| ||||||||| ||||||||||||    
T  52558182 cgataaaaatttgagaaaaggacataattcaatgtaatcaca 52558141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 1502592 - 1502648
Alignment:
Q  35 agaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtc 91  Q
    |||||||||||||||| |||||||||||| |||| ||||| || ||||  |||||||    
T  1502592 agaaaatgacataattgaatgtaatcacatgtgtctgtgttggacacagaacacgtc 1502648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 3180837 - 3180793
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacata 47  Q
    |||||||||||||| |||  ||||||||||| |||||||||||||    
T  3180837 gacactgacacgtctacaatgataaaattttaagaaaatgacata 3180793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 4946274 - 4946206
Alignment:
Q  6 actgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgt 74  Q
    ||||||||||| || || |||  ||||| ||||||||| |||||| |||||||||||| |||| |||||    
T  4946274 actgacacgtctactcccatactattttaagaaaatgatataattgaatgtaatcacatgtgtctgtgt 4946206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 25074781 - 25074833
Alignment:
Q  9 gacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatca 61  Q
    |||||| | |||||||||| | |||||||||||||||||||| | ||||||||    
T  25074781 gacacgccgacaccgataataatttgagaaaatgacataattgagtgtaatca 25074833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 41319383 - 41319327
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaat 59  Q
    ||||| |||||||| ||||| |||| | ||||| |||||||||||||| ||||||||    
T  41319383 gacacggacacgtcgacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 42667634 - 42667666
Alignment:
Q  31 tttgagaaaatgacataatttaatgtaatcaca 63  Q
    |||||||||||||||||||||||| ||||||||    
T  42667634 tttgagaaaatgacataatttaatataatcaca 42667666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 8948 - 8999
Alignment:
Q  17 aacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  8948 aacatcgataaaattttgagaaaatgacataattcaacgtaatcacaagtgt 8999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 8750 - 8705
Alignment:
Q  23 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  8750 gataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 225341 - 225276
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||| | |||| ||||| | |||||||||||||||||||  |||||||| | ||||||    
T  225341 gacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaattataagtgt 225276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 92793 - 92858
Alignment:
Q  3 gacactgacacgtcaacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 68  Q
    |||||||||||| | |||||| ||| | ||||||||||| |||||||| | |||||| ||||||||    
T  92793 gacactgacacgccgacaccgctaataatttgagaaaattacataattcagtgtaattacaagtgt 92858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University