View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_16 (Length: 312)
Name: NF14399_low_16
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 3099174 - 3099466
Alignment:
| Q |
1 |
tgaacaaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaaccggttttggtagggtgttaaaatggctacattacttttaact |
100 |
Q |
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| T |
3099174 |
tgaacaaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaaccggttttggtagggtgttaagatggctacattacttttaact |
3099273 |
T |
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| Q |
101 |
gtgaaaacaacattgtggttgatatctttgatgatgaaactatctcctaatatatttctgttccttgtgattgtcaaatgaacaggatgtgttgctgtaa |
200 |
Q |
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| T |
3099274 |
gtgaaaacaacattgtggttgatatctttgatgatgaaactatctcctaatatatttctgttccttgtgattgtcaaatgaacaggatgtgttgctgtaa |
3099373 |
T |
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| Q |
201 |
caaattaaaccaaaaagaaaatagtaaaaagatttaaatattgatacatggacaaacaataaagttatttaatgaaagtaaaaggagtttaata |
294 |
Q |
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| T |
3099374 |
caaattaaaccaaaaagaaaatagtaaaaagatttaaatattgatacatagacaaacaat-aagttatttaatgaaagtaaaaggagtttaata |
3099466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 3093321 - 3093522
Alignment:
| Q |
5 |
caaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaaccggttttggtagggtgttaaaatggctacattacttttaactgtga |
104 |
Q |
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| T |
3093321 |
caaaccgattttcgaagatggagaatgcagtttccattagcatcaaataagaaccgattctgacagggttttatgatggctacagtacttttaactgtga |
3093420 |
T |
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| Q |
105 |
aaacaacattgtggttgatatctttgatgatgaaactatctcctaatatatttctgttccttgtgattgtcaaatgaacaggatgtgttgctgtaacaaa |
204 |
Q |
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| T |
3093421 |
acacaaccttgttgttgacatctttgacgatgaagttatctccaaataaagctctcttccttgtgattatcaaatgaacaggatttgtggctgtcacaaa |
3093520 |
T |
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| Q |
205 |
tt |
206 |
Q |
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|| |
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| T |
3093521 |
tt |
3093522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 3083235 - 3083311
Alignment:
| Q |
1 |
tgaacaaaccgattttcgaagatggagaatgcggtttccattggcatcaaataagaaccggttttggtagggtgtta |
77 |
Q |
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||||| ||||||| | || ||||| |||||| | |||||||| ||||||||||||||||||| |||| |||||||| |
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| T |
3083235 |
tgaacgaaccgatctacggagatgaagaatgggatttccattagcatcaaataagaaccggtgttggcggggtgtta |
3083311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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