View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_18 (Length: 274)
Name: NF14399_low_18
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 10604711 - 10604472
Alignment:
| Q |
16 |
atgaataacacttcctttccctcagaccatttaaaagcagaggttaattggtctttaattaattgtaaaggcgcatggaattggctgaacacaagaactt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10604711 |
atgaataacacttcctttccctcagaccatttaaaagcagaggttaattggtctttaattaattgtaaaggcgcatggaattggctgaacacaagaactt |
10604612 |
T |
|
| Q |
116 |
tctcgtgaaaagcatcgcatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtctaagcttttccagctgatccttgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10604611 |
tctcgtgaaaagcatcgcatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtctaagcttttccagctgatccttgtc |
10604512 |
T |
|
| Q |
216 |
aagagcagattcttcttcttccgaaagagaacattcaagg |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10604511 |
aagagcagattcttcttcttccgaaagagaacattcaagg |
10604472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 16973865 - 16974096
Alignment:
| Q |
24 |
cacttcctttccctcagaccatttaaaagcagaggttaattggtctttaattaattgtaaaggcgcatggaattggctgaacacaagaactttctcgtga |
123 |
Q |
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||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16973865 |
cacttcctttccctcagtccatttaaaagctgagtttaattggtcttttattaattgtaaaggagcatggaattggctgaacacaagaactttctcgtga |
16973964 |
T |
|
| Q |
124 |
aaagcatcgcatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtctaagcttttccagctgatccttgtcaagagcag |
223 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
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| T |
16973965 |
aaagcatcacatagccgaacaaacttgaacaaaaattttgttttgacaccttcatgtgggttcagtctaatcttttccagttgatccttgtcgagagcag |
16974064 |
T |
|
| Q |
224 |
attcttcttcttccgaaagagaacattcaagg |
255 |
Q |
| |
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||| ||||||||| ||||||| |||||||||| |
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| T |
16974065 |
atttttcttcttctgaaagagcacattcaagg |
16974096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 242
Target Start/End: Original strand, 16964964 - 16965152
Alignment:
| Q |
54 |
agaggttaattggtctttaattaattgtaaaggcgcatggaattggctgaacacaagaactttctcgtgaaaagcatcgcatagccgaacaaactcgaac |
153 |
Q |
| |
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|||| ||||||||||||||||||| ||||||| | | |||| |||||||||||||| ||||||| || |||||| || |||| ||||||||| | | |
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| T |
16964964 |
agagcttaattggtctttaattaagcgtaaaggaccgagtaattcactgaacacaagaaccttctcgttaacagcatcacaaagcctaacaaactccacc |
16965063 |
T |
|
| Q |
154 |
aaaaattttgttttgacaccttcatgtgggttcagtctaagcttttccagctgatccttgtcaagagcagattcttcttcttccgaaag |
242 |
Q |
| |
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|| ||||| ||||| |||||| ||| ||| |||| || ||||||||| ||| | |||||||| ||| ||||||| ||||||||| |||| |
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| T |
16965064 |
aagaatttggttttcacacctccatttggattcaatcgaagcttttctagccggtccttgtcgagaacagattcctcttcttccaaaag |
16965152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 16820977 - 16821118
Alignment:
| Q |
94 |
aattggctgaacacaagaactttctcgtgaaaagcatcgcatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtctaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||||| || || | ||||||||| | || |||||| ||||| |||||| ||| ||| |||| || || |
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| T |
16820977 |
aattggctgaacacaagaactttctctttaacagcatcacaaagtctaacaaactcaaccagaaatttggttttcacacctacatatggattcaatcgaa |
16821076 |
T |
|
| Q |
194 |
gcttttccagctgatccttgtcaagagcagattcttcttctt |
235 |
Q |
| |
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||||||| ||||| |||||||| | | ||||||| ||||||| |
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| T |
16821077 |
gcttttctagctggtccttgtcgacaacagattcctcttctt |
16821118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 17004764 - 17004914
Alignment:
| Q |
92 |
ggaattggctgaacacaagaactttctcgtgaaaagcatcgcatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtct |
191 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||| | || || | ||||||||| | |||||| ||||||||||| ||| | | ||||||| ||| |
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| T |
17004764 |
ggaattggctgaacacgagaactttctcatttaaagcagcacaaagtctaacaaactccaccaaaaactttgttttgacgcctgcgtaggggttcaatct |
17004863 |
T |
|
| Q |
192 |
aagcttttccagctgatccttgtcaagagcagattcttcttcttccgaaag |
242 |
Q |
| |
|
|||||| || ||| | |||||||| ||| |||| || ||||||||| |||| |
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|
| T |
17004864 |
aagcttctctagccggtccttgtcgagaacagactcctcttcttccaaaag |
17004914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 16989150 - 16989357
Alignment:
| Q |
27 |
ttcctttccctcagaccatttaaaagcagaggttaattggtctttaattaattgtaaaggcgcatggaattggctgaacacaagaactttctcgtgaaaa |
126 |
Q |
| |
|
|||||| ||||| | |||||||| ||||||| ||||||||||| |||| || ||||||| | | |||||||||||||| ||||||||||| | | |
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|
| T |
16989150 |
ttccttcccctcggtccatttaagagcagagtttaattggtctataatcaagcgtaaaggatcgagtaattggctgaacacgagaactttctcattgtga |
16989249 |
T |
|
| Q |
127 |
gcatcgcatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtctaagcttttccagctgatccttgtcaagagcagatt |
226 |
Q |
| |
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||| | || || ||||||||| |||||||| ||||||||||| ||| ||| ||| || |||||||||||| || | |||||||||| | ||||| |
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| T |
16989250 |
gcagcacaaagattaacaaactccaacaaaaactttgttttgacgcctgcattgtggtccaatctaagcttttctagacggtccttgtcaacaaaagatt |
16989349 |
T |
|
| Q |
227 |
cttcttct |
234 |
Q |
| |
|
|||||||| |
|
|
| T |
16989350 |
cttcttct |
16989357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 35266211 - 35265980
Alignment:
| Q |
24 |
cacttcctttccctcagaccatttaaaagcagaggttaattggtctttaattaattgtaaaggcgcatggaattggctgaacacaagaactttctcgtga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35266211 |
cacttcctttccctcagaccatttaaaagctgagtttaattggtcttttattaattgtaaaggagcatggaattggctgaacacaagaactttctcgtga |
35266112 |
T |
|
| Q |
124 |
aaagcatcgcatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtctaagcttttccagctgatccttgtcaagagcag |
223 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
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| T |
35266111 |
aaagcatcacatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtctaaacttttccagatgatccttgtcgagagcag |
35266012 |
T |
|
| Q |
224 |
attcttcttcttccgaaagagaacattcaagg |
255 |
Q |
| |
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||| ||||||||| ||||||| |||||||||| |
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| T |
35266011 |
atttttcttcttctgaaagagcacattcaagg |
35265980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 35924687 - 35924918
Alignment:
| Q |
24 |
cacttcctttccctcagaccatttaaaagcagaggttaattggtctttaattaattgtaaaggcgcatggaattggctgaacacaagaactttctcgtga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
35924687 |
cacttcctttccctcagtaaatttaaaagcagagtttaattggtctataattaaatgtaaaggagcaaggaattggctgaacacaagaactttctcgtga |
35924786 |
T |
|
| Q |
124 |
aaagcatcgcatagccgaacaaactcgaacaaaaattttgttttgacaccttcatgtgggttcagtctaagcttttccagctgatccttgtcaagagcag |
223 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
35924787 |
aaagcatcacatagccgaacaaactagaacaaaaattttgttttgacaccttcatgtgggttcagtctaagcttttccagctgatccttgtcgagagcag |
35924886 |
T |
|
| Q |
224 |
attcttcttcttccgaaagagaacattcaagg |
255 |
Q |
| |
|
||| ||||||||| ||||||| |||||||||| |
|
|
| T |
35924887 |
atttttcttcttctgaaagagcacattcaagg |
35924918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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