View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14399_low_19 (Length: 273)

Name: NF14399_low_19
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14399_low_19
NF14399_low_19
[»] chr2 (12 HSPs)
chr2 (12-258)||(30857686-30857926)
chr2 (12-75)||(35315296-35315359)
chr2 (12-76)||(35316828-35316892)
chr2 (13-79)||(19908780-19908846)
chr2 (12-76)||(28564895-28564959)
chr2 (12-75)||(38397085-38397148)
chr2 (12-76)||(13238684-13238748)
chr2 (12-76)||(23259495-23259559)
chr2 (12-79)||(374993-375060)
chr2 (12-79)||(21454503-21454569)
chr2 (12-79)||(30709110-30709177)
chr2 (50-82)||(33205799-33205831)
[»] chr8 (12 HSPs)
chr8 (12-76)||(10672520-10672584)
chr8 (12-83)||(21486300-21486369)
chr8 (12-76)||(24102019-24102083)
chr8 (12-76)||(30426677-30426741)
chr8 (43-77)||(21486925-21486959)
chr8 (12-76)||(28069722-28069786)
chr8 (12-76)||(36991359-36991423)
chr8 (12-75)||(24557189-24557252)
chr8 (12-79)||(26749556-26749623)
chr8 (14-81)||(36748502-36748568)
chr8 (12-79)||(42761713-42761780)
chr8 (12-76)||(40695255-40695319)
[»] chr5 (18 HSPs)
chr5 (12-75)||(29340999-29341062)
chr5 (14-82)||(25879592-25879660)
chr5 (12-76)||(4895743-4895807)
chr5 (12-76)||(11775796-11775860)
chr5 (12-72)||(27428889-27428949)
chr5 (12-76)||(35660617-35660681)
chr5 (37-76)||(28142808-28142847)
chr5 (12-82)||(3057413-3057483)
chr5 (12-82)||(18653358-18653428)
chr5 (12-76)||(3057162-3057226)
chr5 (12-76)||(14349806-14349870)
chr5 (12-76)||(18625429-18625493)
chr5 (12-76)||(32129625-32129689)
chr5 (12-76)||(34827195-34827259)
chr5 (12-76)||(37266734-37266798)
chr5 (12-79)||(43309108-43309175)
chr5 (14-76)||(40753172-40753234)
chr5 (12-81)||(32316511-32316576)
[»] chr4 (20 HSPs)
chr4 (12-83)||(1871273-1871344)
chr4 (12-76)||(34778424-34778488)
chr4 (12-76)||(19901926-19901990)
chr4 (12-75)||(23474115-23474178)
chr4 (12-79)||(37002259-37002326)
chr4 (14-79)||(40215455-40215520)
chr4 (12-76)||(5416474-5416537)
chr4 (12-76)||(5763170-5763234)
chr4 (12-76)||(33262560-33262624)
chr4 (12-76)||(56558282-56558346)
chr4 (28-79)||(31862244-31862295)
chr4 (12-79)||(56269084-56269151)
chr4 (12-79)||(56453828-56453895)
chr4 (37-79)||(52030727-52030769)
chr4 (12-76)||(3952178-3952242)
chr4 (12-76)||(18207048-18207112)
chr4 (12-72)||(23610649-23610709)
chr4 (12-76)||(24073619-24073683)
chr4 (12-76)||(30567904-30567968)
chr4 (12-76)||(38079728-38079792)
[»] chr3 (14 HSPs)
chr3 (16-75)||(10474450-10474509)
chr3 (16-76)||(19830443-19830503)
chr3 (12-79)||(1995444-1995511)
chr3 (12-76)||(2229986-2230050)
chr3 (12-76)||(34373593-34373657)
chr3 (12-76)||(43719955-43720019)
chr3 (39-75)||(47914202-47914238)
chr3 (12-78)||(4659282-4659349)
chr3 (12-79)||(25285845-25285912)
chr3 (12-79)||(31523676-31523743)
chr3 (12-76)||(12402969-12403033)
chr3 (12-76)||(27033654-27033718)
chr3 (12-52)||(33632849-33632889)
chr3 (12-76)||(34373834-34373898)
[»] scaffold0250 (1 HSPs)
scaffold0250 (12-76)||(7150-7214)
[»] chr7 (12 HSPs)
chr7 (12-76)||(32915959-32916023)
chr7 (12-76)||(4888470-4888534)
chr7 (12-76)||(25084736-25084800)
chr7 (12-76)||(12139329-12139394)
chr7 (14-79)||(40023266-40023331)
chr7 (12-76)||(9559062-9559126)
chr7 (12-76)||(16366521-16366585)
chr7 (12-76)||(21151155-21151219)
chr7 (12-76)||(45260435-45260499)
chr7 (12-83)||(989125-989196)
chr7 (12-79)||(47799908-47799975)
chr7 (16-76)||(18198259-18198319)
[»] chr6 (12 HSPs)
chr6 (12-79)||(2800619-2800686)
chr6 (12-76)||(4804451-4804515)
chr6 (12-76)||(7162087-7162151)
chr6 (12-76)||(27826541-27826605)
chr6 (12-79)||(12734410-12734476)
chr6 (22-76)||(29698166-29698220)
chr6 (38-83)||(2720369-2720414)
chr6 (16-76)||(21159381-21159441)
chr6 (12-75)||(17828576-17828639)
chr6 (12-76)||(12412640-12412704)
chr6 (12-76)||(13089757-13089821)
chr6 (12-76)||(17944165-17944229)
[»] chr1 (13 HSPs)
chr1 (30-83)||(5047407-5047460)
chr1 (14-79)||(32887790-32887855)
chr1 (12-79)||(26372252-26372319)
chr1 (30-75)||(32618805-32618850)
chr1 (12-76)||(12151770-12151834)
chr1 (24-80)||(49943989-49944045)
chr1 (12-79)||(39426210-39426277)
chr1 (18-76)||(12380924-12380982)
chr1 (18-76)||(12384991-12385049)
chr1 (13-79)||(24413291-24413357)
chr1 (12-79)||(18976312-18976380)
chr1 (12-76)||(24977243-24977307)
chr1 (12-76)||(50294071-50294135)
[»] scaffold0126 (1 HSPs)
scaffold0126 (12-76)||(22450-22514)
[»] scaffold0035 (1 HSPs)
scaffold0035 (12-76)||(16405-16469)
[»] scaffold0012 (1 HSPs)
scaffold0012 (12-76)||(208066-208130)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 30857686 - 30857926
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttatatagtattttgttttcaaactattaagaaa 111  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||  || |||||||||||||||||||||||      || |||||||||||||||||||    
T  30857686 agaggtagacacaaaaaatagataatggatcctactattaaatggatcacaccatcattaattattttatat------tttttttcaaactattaagaaa 30857779  T
Q  112 gtcttcaataaatttccaaaaacatggtccaattgaacatgtcttaaacaatgtgttcttactcaaatcaaataatgaactgagtgaatggattgatgac 211  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30857780 gtcttcaataaatttccacaaaaatgctccaattgaacatgtcttaaacaatgtgttcttactcaaatcaaataatgaactgagtgaatggattgatgac 30857879  T
Q  212 attcaatttcatagattaattttattttctaaatgtagggaccaaat 258  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  30857880 attcaatttcatagattaattttattttctaaatgtacggaccaaat 30857926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 35315296 - 35315359
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 75  Q
    ||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  35315296 agagatagacacataaaatagataatggatcttactattaattgagtcccaccattattaatta 35315359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 35316892 - 35316828
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  |||||||||| | |||||| ||||||||||||||||||||    
T  35316892 agagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattat 35316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 19908846 - 19908780
Alignment:
Q  13 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    |||||||||||| ||| |||||| ||  ||||||| ||||||| |||||||||||||||||||||||    
T  19908846 gagatagacacataaaatagatagtgagtcctacttttaagtgggtcccaccatcattaattatttt 19908780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 28564959 - 28564895
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  28564959 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 28564895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 38397148 - 38397085
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 75  Q
    ||||||||||| | ||| |||||| ||| | |||||||||||||||||||||||||| ||||||    
T  38397148 agagatagacaaataaaatagatagtgggtgctactattaagtgagtcccaccatcaataatta 38397085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 13238748 - 13238684
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| |  ||||| ||||||||||||||||||||    
T  13238748 agagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtcccaccatcattaattat 13238684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 23259495 - 23259559
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| ||| |  ||| |||||||| ||||||  |||||||||||||||||||    
T  23259495 agagatagacacaaaaaatagctggtgggtcctactactaagtggatcccaccatcattaattat 23259559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 375060 - 374993
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||||||| ||  |  ||| ||||| || |||||| |||||||||||||||||||||||    
T  375060 agagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttt 374993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 21454503 - 21454569
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||||||| |||||  ||| || ||| |||||||| || ||||||||||||||||||||    
T  21454503 agagatagacacaaaaa-tagattgtgggtcataccattaagtgggttccaccatcattaattatttt 21454569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 30709177 - 30709110
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||| ||| |||||| ||| |||||| | ||||||  ||||||||||||||||| ||||    
T  30709177 agagatagacacataaaatagatattgggtcctaccactaagtggatcccaccatcattaattgtttt 30709110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 33205831 - 33205799
Alignment:
Q  50 taagtgagtcccaccatcattaattattttata 82  Q
    ||||||||| |||||||||||||||||||||||    
T  33205831 taagtgagttccaccatcattaattattttata 33205799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 10672520 - 10672584
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  |||||||||| | |||||||||||||||||||||||||||    
T  10672520 agagatagacacaaaaaatagatggtggatcctaccactaagtgagtcccaccatcattaattat 10672584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 21486300 - 21486369
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttatat 83  Q
    ||||||||||||||||  |||||||| |||| ||| | ||||| |||| |||||||||||||||||||||||    
T  21486300 agagatagacacaaaa--tagataatagatcttaccactaagtaagtctcaccatcattaattattttatat 21486369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 24102083 - 24102019
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||| ||||| |||||  |||||||||| | ||||||||| |||||||||||||||||    
T  24102083 agagatagacataaaaaatagatggtggatcctaccactaagtgagttccaccatcattaattat 24102019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 30426677 - 30426741
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  30426677 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 30426741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 21486959 - 21486925
Alignment:
Q  43 ctactattaagtgagtcccaccatcattaattatt 77  Q
    |||||||||||||||||||||||||||||||||||    
T  21486959 ctactattaagtgagtcccaccatcattaattatt 21486925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 28069786 - 28069722
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||| ||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  28069786 agagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 28069722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 36991423 - 36991359
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||| || || ||||| |||| |||||| | |||||| ||||||||||||||||||||    
T  36991423 agagatagacataagaaatagatgatgggtcctaccactaagtgggtcccaccatcattaattat 36991359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 24557189 - 24557252
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 75  Q
    ||||||| | ||| ||| ||| |||||| |||||| ||||||||||||||| ||||||||||||    
T  24557189 agagatatagacataaaataggtaatgggtcctaccattaagtgagtcccatcatcattaatta 24557252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 26749556 - 26749623
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||||||| ||  | |||| |||||  | |||||| |||||||||||||||||||||||    
T  26749556 agagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 26749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 36748502 - 36748568
Alignment:
Q  14 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttat 81  Q
    ||||||||||||||| |||| |  || |||||| ||||||||  ||||||||||||||||||||||||    
T  36748502 agatagacacaaaaa-tagacagcgggtcctaccattaagtggatcccaccatcattaattattttat 36748568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 42761780 - 42761713
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||| ||| |||||| |||||||||| | | |||| || ||| ||||||||||||||||    
T  42761780 agagatagacacataaaatagatagtggatcctaccactcagtgggttccatcatcattaattatttt 42761713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 40695255 - 40695319
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  | | |||||| | ||||||||| |||||||||||| ||||    
T  40695255 agagatagacacaaaaaatagatggtaggtcctaccactaagtgagttccaccatcattagttat 40695319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 29341062 - 29340999
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 75  Q
    ||||||||||||| ||| |||||| ||| ||||||||||||||| |||||||||||||||||||    
T  29341062 agagatagacacagaaaatagatagtgggtcctactattaagtgggtcccaccatcattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 25879592 - 25879660
Alignment:
Q  14 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttata 82  Q
    ||||||| |||||||||||||| || | | || ||||||||| ||||||||||||||||||||||||||    
T  25879592 agatagatacaaaaagtagatagtgaaacttattattaagtgtgtcccaccatcattaattattttata 25879660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 4895743 - 4895807
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  4895743 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 4895807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 11775860 - 11775796
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  |||||||||| | |||||| |||||||| |||||||||||    
T  11775860 agagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccgtcattaattat 11775796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 27428889 - 27428949
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaa 72  Q
    ||||||||||||||||| |||||  || ||||||| ||||||||||| |||||||||||||    
T  27428889 agagatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccatcattaa 27428949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 35660617 - 35660681
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  35660617 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 35660681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 28142808 - 28142847
Alignment:
Q  37 tggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  28142808 tggatcctaccattaagtgagtcccaccatcattaattat 28142847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 3057483 - 3057413
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttata 82  Q
    ||||||||||| |||||  |||| ||||||||||| |  |||||||| ||| |||||||||||||||||||    
T  3057483 agagatagacaaaaaaaaaagatgatggatcctaccacaaagtgagttccatcatcattaattattttata 3057413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 18653428 - 18653358
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttata 82  Q
    ||||||||||||||||| |||||| ||  | |||| |||||||||||| |||||| | |||||||||||||    
T  18653428 agagatagacacaaaaaatagatagtgagttctaccattaagtgagtctcaccattaataattattttata 18653358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 3057162 - 3057226
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||| ||||||||| |||||  |||||||||| |||||||||||| ||  ||||||||||||    
T  3057162 agagataaacacaaaaaatagatggtggatcctaccattaagtgagtcacataatcattaattat 3057226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 14349870 - 14349806
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||| ||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  14349870 agagacagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 14349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 18625429 - 18625493
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||| ||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  18625429 agagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 18625493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 32129625 - 32129689
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||||| |||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  32129625 agagatagacaccaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 32129689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 34827259 - 34827195
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||| ||||| |||||  |||||||||| | |||||| ||||||||||| ||||||||    
T  34827259 agagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcccaccatctttaattat 34827195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 37266798 - 37266734
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| || ||| | |||||| ||||||||||||||||||||    
T  37266798 agagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaattat 37266734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 43309175 - 43309108
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||| ||||| |||||| |||||| ||| ||||| || || ||||||||||||||| ||||    
T  43309175 agagatagacataaaaaatagatagtggatcttaccattaaatgggttccaccatcattaattttttt 43309108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 40753172 - 40753234
Alignment:
Q  14 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||| || ||  ||| |||||| | |||||| ||||||||||||||||||||    
T  40753172 agatagacacaaaaaatatatggtgggtcctaccactaagtgggtcccaccatcattaattat 40753234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 32316511 - 32316576
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttat 81  Q
    ||||||||||||||||| |||    ||||| |||| | |||||||||||||| ||||| |||||||||||    
T  32316511 agagatagacacaaaaactag----tggattctaccactaagtgagtcccacaatcataaattattttat 32316576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 1871344 - 1871273
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttatat 83  Q
    ||||||||||| ||||  |||||| |||||||||||| |||||| |||||| ||||||||||||||||||||    
T  1871344 agagatagacaaaaaatatagatagtggatcctactactaagtgggtcccatcatcattaattattttatat 1871273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 34778488 - 34778424
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  |||||||||| | |||||| ||||||||||||||||||||    
T  34778488 agagatagacacaaaaaatagatggtggatcctaccactaagtgggtcccaccatcattaattat 34778424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 19901926 - 19901990
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  19901926 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 19901990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 23474178 - 23474115
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 75  Q
    ||||||||||||| ||| |||||  ||| |||||||||| ||||| ||||||||||||||||||    
T  23474178 agagatagacacataaaatagatggtgggtcctactattgagtgaatcccaccatcattaatta 23474115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 37002259 - 37002326
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||||||| ||  |  ||||||||| || |||||| |||||||||||||||||||||||    
T  37002259 agagatagacacaaaaaataagtggtggatcctattactaagtgggtcccaccatcattaattatttt 37002326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 40215455 - 40215520
Alignment:
Q  14 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||| ||| ||||| ||||| ||||||||||| | | ||||||||||||||||||||||| ||||    
T  40215455 agatacacataaaaattagattatggatcctaccacttagtgagtcccaccatcattaattttttt 40215520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 5416474 - 5416537
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  5416474 agagatagacacaaaaa-tagattgtgggtcctaccactaagtgggtcccaccatcattaattat 5416537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 5763170 - 5763234
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||| ||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  5763170 agagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 5763234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 33262560 - 33262624
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  |||||||||| | ||| |  ||||||||||||||||||||    
T  33262560 agagatagacacaaaaaatagatggtggatcctaccactaaataggtcccaccatcattaattat 33262624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 56558346 - 56558282
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||  | |||||| ||||||||||||||||||||    
T  56558346 agagatagacacaaaaaatagatggtgggtcctatcactaagtgggtcccaccatcattaattat 56558282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 31862244 - 31862295
Alignment:
Q  28 agtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    |||||||  |||||||||| | |||||| |||||||||||||||||||||||    
T  31862244 agtagatggtggatcctaccactaagtgggtcccaccatcattaattatttt 31862295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 56269084 - 56269151
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||||||| ||  |  ||| |||||| | |||||| |||||||||||||||||||||||    
T  56269084 agagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaattatttt 56269151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 56453828 - 56453895
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||||||| ||| |  ||| |||||  |||||||| |||||||||||||| ||||||||    
T  56453828 agagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattatttt 56453895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 52030727 - 52030769
Alignment:
Q  37 tggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    |||||||||| | |||||| |||||||||||||||||||||||    
T  52030727 tggatcctacaaataagtgggtcccaccatcattaattatttt 52030769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 3952178 - 3952242
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||| ||||| |||||  ||| |||||| | |||||| ||| ||||||||||||||||    
T  3952178 agagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtctcaccatcattaattat 3952242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 18207048 - 18207112
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||| ||||| |||||  ||| |||||| | |||||| |||||| |||||||||||||    
T  18207048 agagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtcccatcatcattaattat 18207112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 23610709 - 23610649
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaa 72  Q
    ||||||||||||||||| |||||  ||| || ||| | |||||| ||||||||||||||||    
T  23610709 agagatagacacaaaaaatagatggtgggtcataccactaagtgggtcccaccatcattaa 23610649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 24073683 - 24073619
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||||||| || |||||  ||| |||||| | |||||| ||||| ||||||||||||||    
T  24073683 agagatagacacaacaaatagatggtgggtcctaccactaagtgggtcccgccatcattaattat 24073619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 30567968 - 30567904
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| || ||| |||||||||||||    
T  30567968 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggttccatcatcattaattat 30567904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 38079728 - 38079792
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||||||| || |||||  ||| |||||||| ||||||  | |||||||||||||||||    
T  38079728 agagatagacacaagaaatagatggtgggtcctactactaagtggattccaccatcattaattat 38079792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 10474450 - 10474509
Alignment:
Q  16 atagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 75  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  10474450 atagacacataaaatagataatggatcctactattaagtgagttccaccaacattaatta 10474509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 19830443 - 19830503
Alignment:
Q  16 atagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||| |||||  ||| |||||| |||||||| ||||||||||||||||||||    
T  19830443 atagacacaaaaaatagatggtgggtcctaccattaagtgggtcccaccatcattaattat 19830503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 1995511 - 1995444
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||| | ||| |||||||||  |||||| | |||||||||| |||||||||||||||||||    
T  1995511 agagatagacatagaaaatagataatgagtcctaccaataagtgagtctcaccatcattaattatttt 1995444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 2230050 - 2229986
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| ||||| |||| |||||| | ||||||  | |||||||||||||||||    
T  2230050 agagatagacacaaaaaatagatgatgggtcctaccactaagtggtttccaccatcattaattat 2229986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 34373593 - 34373657
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||||| |||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  34373593 agagatagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 34373657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 43719955 - 43720019
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| || ||  ||| |||||| | |||||| ||||||||||||||||||||    
T  43719955 agagatagacacaaaaaataaattgtgggtcctaccactaagtgggtcccaccatcattaattat 43720019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 47914202 - 47914238
Alignment:
Q  39 gatcctactattaagtgagtcccaccatcattaatta 75  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47914202 gatcctattattaagtgagtcccaccatcattaatta 47914238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 4659349 - 4659282
Alignment:
Q  12 agagatagacacaaaa-agtagataatggatcctactattaagtgagtcccaccatcattaattattt 78  Q
    |||||||||||||||| |||||||||| | || || |||||| ||||||||||||| |||||| ||||    
T  4659349 agagatagacacaaaatagtagataataggtcatattattaaatgagtcccaccattattaataattt 4659282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 25285845 - 25285912
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||| ||| |||||| |||||||||  ||||| |||| ||||||||||| |||| ||||    
T  25285845 agagatagacacataaaatagatagtggatcctatcattaaatgagacccaccatcatcaattttttt 25285912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 31523676 - 31523743
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||||||| ||  |  ||| ||||| || |||||| |||||||||||||||||||||||    
T  31523676 agagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttt 31523743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 12403033 - 12402969
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||| | ||||| |||||  ||||| |||| | ||||||||||||||||| |||||||||    
T  12403033 agagatagatataaaaattagatggtggattctaccactaagtgagtcccaccattattaattat 12402969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 27033718 - 27033654
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||||||| || |||||  ||| |||||| | ||||||  |||||||||||||||||||    
T  27033718 agagatagacacaagaaatagatggtgggtcctaccactaagtggatcccaccatcattaattat 27033654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 33632889 - 33632849
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaa 52  Q
    ||||||||||||| ||| |||||| ||||||||||||||||    
T  33632889 agagatagacacataaaatagatagtggatcctactattaa 33632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 34373898 - 34373834
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | ||| |  ||||||||||||||||||||    
T  34373898 agagatagacacaaaaaatagatggtgggtcctaccactaattaggtcccaccatcattaattat 34373834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 7214 - 7150
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||| || |||||||||||||||||    
T  7214 agagatagacacaaaaaatagatggtgggtcctactattaagtgggttccaccatcattaattat 7150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 32916023 - 32915959
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| || ||| ||| |||||| |||||||||||||||||||||| ||||||    
T  32916023 agagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaattat 32915959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 4888534 - 4888470
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||| ||| |||||| | |||||  ||||||||||||||||||||    
T  4888534 agagatagacacaaaaaatagatagtgggtcctaccactaagtaggtcccaccatcattaattat 4888470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 25084736 - 25084800
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  25084736 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 25084800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 12139394 - 12139329
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagt-gagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| ||||||| | ||||||||||||||||||||    
T  12139394 agagatagacacaaaaaatagatggtgggtcctaccattaagtggggtcccaccatcattaattat 12139329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 40023266 - 40023331
Alignment:
Q  14 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||| | ||| ||| ||||||||| ||| |||||||| ||||||||| |||||||||||||    
T  40023266 agatagacatataaaatagttaatggatcttaccattaagtgggtcccaccaccattaattatttt 40023331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 9559062 - 9559126
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||| ||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  9559062 agagatagatacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 9559126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 16366585 - 16366521
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||| || || |||||  |||||||||| | |||||| ||||||||||||||||||||    
T  16366585 agagatagacataagaaatagatggtggatcctaccactaagtgtgtcccaccatcattaattat 16366521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 21151219 - 21151155
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||||||| || |||||   ||||||||| | |||||| ||||||||||||||||||||    
T  21151219 agagatagacacaagaaatagatggaggatcctaccactaagtgggtcccaccatcattaattat 21151155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 45260435 - 45260499
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  |||||||||| | ||||||  ||||| |||||||||||||    
T  45260435 agagatagacacaaaaaatagattgtggatcctaccactaagtggatcccatcatcattaattat 45260499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 989196 - 989125
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattattttatat 83  Q
    ||||||||||||||||| || ||| ||| |||||| | |||||  |||| ||||| ||||||||||||||||    
T  989196 agagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccataattaattattttatat 989125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 47799908 - 47799975
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||||||| ||  | |||| |||||  | |||||| |||||||||||||||||||||||    
T  47799908 agagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 47799975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 18198319 - 18198259
Alignment:
Q  16 atagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||| |||||  ||| | || | | |||||||||||||||||||||||||||    
T  18198319 atagacacaaaaaatagatggtgggttctgccactaagtgagtcccaccatcattaattat 18198259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 2800619 - 2800686
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||| ||| |||||| |||||| ||| |||||||| |||||||||||||| ||||||||    
T  2800619 agagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattatttt 2800686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 4804515 - 4804451
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  4804515 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 4804451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 7162151 - 7162087
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||||||| || |||||  ||| |||||||| |||||| ||||||||||||||||||||    
T  7162151 agagatagacacaagaaatagatggtgggtcctactactaagtgggtcccaccatcattaattat 7162087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 27826605 - 27826541
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  27826605 agagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 27826541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 12734476 - 12734410
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||| ||||||| ||||||||||| ||||  | ||||||| ||||||||||||||||||||||    
T  12734476 agagatagaaacaaaaactagataatgga-cctatcactaagtgaatcccaccatcattaattatttt 12734410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 29698220 - 29698166
Alignment:
Q  22 acaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||| |||||  |||||||||| |||||||| ||||||||||||||||||||    
T  29698220 acaaaaaatagatggtggatcctaccattaagtgggtcccaccatcattaattat 29698166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 2720414 - 2720369
Alignment:
Q  38 ggatcctactattaagtgagtcccaccatcattaattattttatat 83  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||    
T  2720414 ggatcctaccactaagtgggtcccaccatcattaattattttatat 2720369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 21159381 - 21159441
Alignment:
Q  16 atagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  21159381 atagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattat 21159441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 17828576 - 17828639
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaatta 75  Q
    ||||||||||||| ||| |||||| ||||| |||||||||||||  ||||| ||||| ||||||    
T  17828576 agagatagacacataaaatagatagtggattctactattaagtggatcccatcatcaataatta 17828639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 12412704 - 12412640
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    |||||||||||||| || |||||  ||| |||||| | |||||| || |||||||||||||||||    
T  12412704 agagatagacacaagaaatagatggtgggtcctaccactaagtgggttccaccatcattaattat 12412640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 13089757 - 13089821
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||  |||||  ||| |||||| | |||||| | ||||||||||||||||||    
T  13089757 agagatagacacaaaatatagatggtgggtcctaccactaagtgggccccaccatcattaattat 13089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 17944229 - 17944165
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  | | |||||| | ||| || ||||||||||||||||||||    
T  17944229 agagatagacacaaaaaatagatggtaggtcctaccactaaatgggtcccaccatcattaattat 17944165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 5047407 - 5047460
Alignment:
Q  30 tagataatggatcctactattaagtgagtcccaccatcattaattattttatat 83  Q
    ||||||||||||||||| | || ||| |||||||||||||||||||||||||||    
T  5047407 tagataatggatcctaccactatgtgggtcccaccatcattaattattttatat 5047460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 32887790 - 32887855
Alignment:
Q  14 agatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||| ||| || ||| |||||||||| ||||| || |||||||||||||||||||||||    
T  32887790 agatagacacataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattatttt 32887855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 26372319 - 26372252
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||  ||| |||| ||| |||||||| |||||||| ||||||||| |||||||||||||    
T  26372319 agagatagacacgtaaaatagacaatagatcctaccattaagtgggtcccaccaccattaattatttt 26372252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 32618850 - 32618805
Alignment:
Q  30 tagataatggatcctactattaagtgagtcccaccatcattaatta 75  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||    
T  32618850 tagatagtggatcctactattaagtaggtcccaccatcattaatta 32618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 12151834 - 12151770
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||| ||||||||||| |||||  ||| |||||| | |||||| ||||||||||||||||||||    
T  12151834 agagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtcccaccatcattaattat 12151770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 49943989 - 49944045
Alignment:
Q  24 aaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttta 80  Q
    ||||| ||||| |||| ||||| |||||| ||||||| |||||||||||||||||||    
T  49943989 aaaaaatagatgatgggtcctattattaaatgagtcctaccatcattaattatttta 49944045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 39426277 - 39426210
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    ||||||||||||| ||| |||||| ||| |||||| | ||| || ||||||| |||||||||||||||    
T  39426277 agagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattatttt 39426210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 12380924 - 12380982
Alignment:
Q  18 agacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||| |||||  ||| | |||| | |||||||||||||||||||||||||||    
T  12380924 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattat 12380982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 12384991 - 12385049
Alignment:
Q  18 agacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||| |||||  ||| | |||| | |||||||||||||||||||||||||||    
T  12384991 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattat 12385049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 24413291 - 24413357
Alignment:
Q  13 gagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    |||||||||||||||| | |||  ||| |||||  ||||| || |||||||||||||||||||||||    
T  24413291 gagatagacacaaaaaatggatggtgggtcctatcattaaatgggtcccaccatcattaattatttt 24413357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 18976312 - 18976380
Alignment:
Q  12 agagatagacacaaaa-agtagataatggatcctactattaagtgagtcccaccatcattaattatttt 79  Q
    |||||||||||||||| | |||||  ||||||| || |||||||  |||||| ||||||||||||||||    
T  18976312 agagatagacacaaaagaatagatggtggatccaaccattaagtaggtcccatcatcattaattatttt 18976380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 24977307 - 24977243
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  |||||||||| | |||||| || |||| ||||||| ||||    
T  24977307 agagatagacacaaaaaatagatggtggatcctaccactaagtgggttccacaatcattagttat 24977243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 50294071 - 50294135
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||  ||| |||||| | ||||||  ||| |||||||||||||||    
T  50294071 agagatagacacaaaaaatagatggtgggtcctaccactaagtggatcctaccatcattaattat 50294135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 22450 - 22514
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| |||||| |||||||||| | ||||||||| |||| || |||||||||    
T  22450 agagatagacacaaaaaatagatagtggatcctaccactaagtgagttccacaataattaattat 22514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 16405 - 16469
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||||||||||||| || ||  ||| |||||| | |||||| |||||| |||||||||||||    
T  16405 agagatagacacaaaaaataaatggtgggtcctaccactaagtgggtcccatcatcattaattat 16469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 208130 - 208066
Alignment:
Q  12 agagatagacacaaaaagtagataatggatcctactattaagtgagtcccaccatcattaattat 76  Q
    ||||||| ||||||||| |||||  ||| |||||| | |||||| |||||| |||||||||||||    
T  208130 agagataaacacaaaaaatagatggtgggtcctaccactaagtgggtcccatcatcattaattat 208066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University