View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14399_low_2 (Length: 669)
Name: NF14399_low_2
Description: NF14399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14399_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 129 - 669
Target Start/End: Original strand, 42956093 - 42956636
Alignment:
| Q |
129 |
ctgaaacacaatgaattaagatagtgatagcctaaagtgttcacaacttttgagaattcaactctcgcaggtatctagatttaccggtcaagcaatgcaa |
228 |
Q |
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| T |
42956093 |
ctgaaacacaatgaattaagatagtgatagcctaaagtgttcacaacttttgagaattcaactctcgcaggtatctagatttaccggtcaagcaatgcaa |
42956192 |
T |
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| Q |
229 |
aaaattggatctaggaaccaccttggttaacaagttagctcgattgtcttcaccaacaactttcttcacttcaagtaaccgtcatacaaatatgtctctg |
328 |
Q |
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| T |
42956193 |
aaaattggatctgggaaccaccttggttaacaagttagctcgattgtcttcaccgacaactttcttcacttcaagtaaccgtcatacaaatatgtctctg |
42956292 |
T |
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| Q |
329 |
ataaaatgcagtcgttcatcaatatgtttttctgcggtattgagacatcattgttactgatgttaccgctactatccttagtaattcaaaaatcatgaaa |
428 |
Q |
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| T |
42956293 |
ataaaatgctgtctttcatcaatatgtttttctgcggtattgagacatcattgttactgatgttaccactactatccttagtaattcaaaaatcatgaaa |
42956392 |
T |
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| Q |
429 |
atgctagttgctttaaccaaacttattttttcctttcataattaaagagattatgtgagtgattttttactgatgttaatcactgcttcgtttgaaagca |
528 |
Q |
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| T |
42956393 |
atgctagttgctttaaccaaacttattttttcctttcataattaaagagattatgtgtgtgattttttactgatgttaatcactgcttcgtttgaaagca |
42956492 |
T |
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| Q |
529 |
acaacacaagaaaagtgtattgtatatagtacacatcctac---nnnnnnnnnaacaaagacaaaactagttcatttcattcatagttaaatattacatt |
625 |
Q |
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| T |
42956493 |
acaacacaagaaaagtgtattgtatatagtacacatcctacttttttttttttaacaaagacaaaactagttcatttcattcatagttaaatagtacatt |
42956592 |
T |
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| Q |
626 |
agaaaaaatatggggctagggtgaaatgaaatggcaccacataa |
669 |
Q |
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| T |
42956593 |
agaaaaaatatggggctagggtgaaatgaaatggcaccacataa |
42956636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 42956009 - 42956095
Alignment:
| Q |
16 |
atgaacaaagatgttatcgcaacagcttttataaaaaacataagcaaaaactaacttggtaaattgtaaacacaattaatgatcctg |
102 |
Q |
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| T |
42956009 |
atgaacaaagatgttatcgcaacagcttttataaaaaacataggcaaaatctaacttggtaaattgtaaacacaattagtgatcctg |
42956095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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